GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001383-TA|BGIBMGA001383-PA|IPR005886|UDP-glucose
4-epimerase, IPR001509|NAD-dependent epimerase/dehydratase
         (356 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   7.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 131 YKLVYSSSCTVYGEPEYLPINESHPTGK 158
           YK++Y+ +  V    EY+ +NE +P  +
Sbjct: 19  YKVMYNGNNNVTDLVEYVLLNEDNPCAR 46


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 138 SCTVYGEPEYLP-INESHP---TGKSLTSPYG 165
           SCT Y  PEY+  +N   P    G    +P G
Sbjct: 370 SCTHYQNPEYISVVNPESPYPQIGSERATPVG 401


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,802
Number of Sequences: 317
Number of extensions: 3895
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 356
length of database: 114,650
effective HSP length: 58
effective length of query: 298
effective length of database: 96,264
effective search space: 28686672
effective search space used: 28686672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)