Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001383-TA|BGIBMGA001383-PA|IPR005886|UDP-glucose
4-epimerase, IPR001509|NAD-dependent epimerase/dehydratase
(356 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 381 e-106
SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08) 46 4e-05
SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 4e-04
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) 38 0.016
SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037) 37 0.029
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 36 0.038
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06) 31 1.4
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 30 2.5
SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14) 29 4.4
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8) 29 7.6
SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11) 29 7.6
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 381 bits (937), Expect = e-106
Identities = 187/339 (55%), Positives = 238/339 (70%), Gaps = 15/339 (4%)
Query: 1 MSRAVLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEE 60
MS+ VLVTGGAGY+GSH V+ +L E+V++DNLSN+ E ++R+EE
Sbjct: 37 MSKKVLVTGGAGYIGSHCVVEILNAG-----YEVVIIDNLSNS-------DAECVRRVEE 84
Query: 61 LTGKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCT 120
++GK V F+ D+ EALD IF+ H + V+HFA LKAVGESV+ PL YY N+ GT
Sbjct: 85 ISGKKVPFFIEDLLNKEALDDIFKKHKFNGVLHFAGLKAVGESVQIPLRYYHNNLTGTLH 144
Query: 121 LFEIMRKHGVYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSPYGKSKYFCEEIMKDLCV 180
L E M+KHGV+ LV+SSS TVYG+P++LPI ESHP G T+PYGK+KYF EE++KDLC
Sbjct: 145 LLECMKKHGVHNLVFSSSATVYGDPQFLPITESHPAG-GCTNPYGKTKYFIEEMLKDLCY 203
Query: 181 SDKKWAIISLRYFNPVGAHESGRIGEDPSGIPNNLMPYISQVAVGRLKELKVFGDDYPTA 240
++K++ I+SLRYFNPVGAH+SG+IGEDP IPNNL+PYI+QVAVG+ L VFG DY T
Sbjct: 204 AEKEFNIVSLRYFNPVGAHKSGKIGEDPKDIPNNLLPYITQVAVGKRPHLNVFGKDYDTP 263
Query: 241 DGTGVRDYIHVCDLAAGHVQAIKLFHQPGFNGFHAINLGTGTGYSVLEMVAAFSNASGXX 300
DGTGVRDYIHV DLA GHV A+K + G+ NLGTG GYSVLEMV A ASG
Sbjct: 264 DGTGVRDYIHVVDLAMGHVAALKKVEEK--CGWKVYNLGTGRGYSVLEMVKAVEKASGKE 321
Query: 301 XXXXXXXXXXGDVTANVADVALATRSLGWRATRSLHDMC 339
GD+ + AD +LA + L W+ATR+ ++MC
Sbjct: 322 IPYKFTDRRAGDIASCYADPSLAAKELNWKATRAQNEMC 360
>SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 57.2 bits (132), Expect = 2e-08
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 66 VHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLFEIM 125
++ K DI A L IF+ ID V+HFAA V S L++ + N+ GT L +
Sbjct: 50 INLDKGDICEANHLKYIFQAEQIDTVLHFAAQSHVDNSFWSSLDFTKTNVYGTHVLINVA 109
Query: 126 RKHGVYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSPYGKSKYFCEEIMKDLCVSDKKW 185
+ + K ++ S+ VYG L S + ++PY SK E I+ + K+
Sbjct: 110 HEAKIKKFIHVSTDEVYGGNSSLGDMHSESSPLRPSNPYAASKAAAECIVMSY-LESFKF 168
Query: 186 AIISLRYFNPVGAHE 200
+I R N G H+
Sbjct: 169 PVIITRSNNVYGPHQ 183
>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
Length = 327
Score = 46.4 bits (105), Expect = 4e-05
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 72 DIRCAEALDRIFENHNIDCVIHFAA-LKAVGESVEKPLEYYQVNINGTCTLFEIMRKHGV 130
D+ ++L I NHNID ++HF+A L AVGE + + QVNI G + E RK+ +
Sbjct: 80 DVLDPQSLQSIVVNHNIDWIVHFSAILSAVGE--QNVTQALQVNIEGFHNIIETCRKYNL 137
Query: 131 YKLVYSSSCTVYGEPEYLPINESHPTGKSLTSPYGKSKYFCE 172
+L S+ +G PE N T + + YG +K E
Sbjct: 138 -RLFSPSTIGAFG-PETPMDNTPDITIQRPKTIYGVAKVHME 177
>SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 42.7 bits (96), Expect = 4e-04
Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 257 GHVQAIKLFHQPGFNGFHAINLGTGTGYSVLEMVAAFSNASG 298
GHV A+K + G+ NLGTG GYSVLEMV A ASG
Sbjct: 2 GHVAALKKVEEKC--GWKVYNLGTGRGYSVLEMVKAVEKASG 41
>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
Length = 672
Score = 37.5 bits (83), Expect = 0.016
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELTGK 64
VLVTG +G++ H V LLE +G + V +LS +KK + L+ + +
Sbjct: 18 VLVTGASGFIACHVVKQLLE---EGKFIVRGTVRDLS------VDKKVQPLRNLCPDSK- 67
Query: 65 TVHFYKVDIRCAEALDRI-FENHNIDC--VIHFAA-LKAVGESVEKPLEYYQVNINGTCT 120
Y ++I A+ +D + +E DC V+H A+ A +E + + + GT +
Sbjct: 68 ----YPLEIVEADLMDEVCWERAAKDCQYVLHMASPFPASNPKLES--DIIEPAVEGTRS 121
Query: 121 LFEIMRKHGVYKLVYSSSCTV--YGEPEYLPINESHPTGKSLTSPYGKSKYFCEE 173
+ + K GV ++V +SS +G + + E + +S PY KSK E+
Sbjct: 122 VLKACAKCGVKRVVLTSSIAAVSFGHDDSRVLTEEDWSIESECFPYAKSKLLAEK 176
>SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)
Length = 116
Score = 36.7 bits (81), Expect = 0.029
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELTGK 64
+LVTGG G VGSH + L + L I + + ++EL K
Sbjct: 2 ILVTGGTGLVGSHLLYELALKN-----LPIKAIYRTKESLATVKRVFSYFTTNVDELFNK 56
Query: 65 TVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTL 121
+ + + DI +LD F+ + V H AAL + + + QVNI+GT +
Sbjct: 57 -IQWIQADITDVPSLDEAFK--EVTLVYHAAALVSFNSKDYRAMR--QVNIDGTANM 108
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 36.3 bits (80), Expect = 0.038
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDN----LSNAY-CAEGEKKPEALKRIE 59
VLVTGGAGY+GS V LL++ ++ V D +S+ Y CA R++
Sbjct: 143 VLVTGGAGYLGSSLVPILLDQG-----YKVTVYDRFLWGISSLYPCASNP-------RLQ 190
Query: 60 ELTGKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTC 119
+ G DI L + D VIH A++ + P + +VN GT
Sbjct: 191 IING--------DILDVGHLSQCISE--CDAVIHLASIVGYPACEKDPQKATEVNEQGTR 240
Query: 120 TLFEIMRKHGVYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSPYGKSKYFCEEIM 175
+ + + LVY+S+ + YG E ES P S + YGK+K EE++
Sbjct: 241 NVVDALLPG--QPLVYASTGSCYGAIEDGLCTESTPI--SPLTLYGKTKANGEEMV 292
>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
Length = 441
Score = 31.1 bits (67), Expect = 1.4
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 23/177 (12%)
Query: 2 SRAVLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEK-KPEALKRIEE 60
+R VLV GG G++GS V L+++ GD + IV N N Y E+ KP
Sbjct: 25 TRRVLVFGGNGFIGSEVVSRLIKQ---GDDITIV---NRGNWYFDSKERIKPYTSTHYRC 78
Query: 61 LTGKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCT 120
K +H + C E L F D V+ F++ ++ +++ LE ++ +
Sbjct: 79 DRDKALH-----LECPELLTSGF----YDIVLDFSSYTSL--QIKQVLETFKERVG---- 123
Query: 121 LFEIMRKHGVYKLVYSSSCTVYGEPEYL-PINESHPTGKSLTSPYGKSKYFCEEIMK 176
L+ + VY++ E + + P + + YG K CEE ++
Sbjct: 124 LYIYISSDSVYEVCDKKHKGPSREEDAVRPKSPKKRLKLKKSEEYGHEKLACEEALR 180
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 30.3 bits (65), Expect = 2.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 1 MSRAVLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKR 57
MS +L G G H ++TL+E+Q +G PL D C + E K A R
Sbjct: 1 MSSILLPVGQCGNQIGHELMTLVEKQCEGKPLS--HRDGKLRCVCVDSESKVIASNR 55
>SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14)
Length = 597
Score = 29.5 bits (63), Expect = 4.4
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 LLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELTGKTVHFYKVDIRC 75
LL + PL+I+V S A+ A+G + +A+K + L G+ YKV + C
Sbjct: 413 LLNGRQIRTPLDILVP---SPAHQAQGRQDKQAVKAAQRLAGRQDRRYKVGMAC 463
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 5.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 28 DGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELTGKTVHFYKVDIRCAEALDRIFENHN 87
DG PLE V DNL++ E +K P+ + + + + Y V C E L+ I ++ N
Sbjct: 6473 DGLPLENFVDDNLNDDDDTEAQKTPQRYMLLANVINEQMKQYAV---CNEDLNEIQQDMN 6529
>SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8)
Length = 190
Score = 28.7 bits (61), Expect = 7.6
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 53 EALKRIEELTGKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGES-VEKPLEYY 111
E+LK L+ +HFY + CA L ++ N+ ++H K +G++ V E
Sbjct: 34 ESLKNNSTLSTIGIHFYSLGDACASELAKVLVNNTSLNIVHIGG-KYLGDAGVASIAEAL 92
Query: 112 QVN 114
+VN
Sbjct: 93 KVN 95
>SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11)
Length = 556
Score = 28.7 bits (61), Expect = 7.6
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 149 PINESHPTGKSLTSPYGKSKYFCEEIMKDLCV-----SDKKWAIISLRYFNPVGAHESGR 203
P E+ K T P GK KYF K DK + ++ + +GA SG
Sbjct: 409 PKLETKEIEKEFTKPSGKIKYFLGHDYKKAQTYTNRYVDKSQLVRNIEHQFSIGAVVSGN 468
Query: 204 IGEDPSGIPNNLMPYISQVAVGRLKELKVFGDDYPT-ADGTGVR 246
G I +A+ +E KV G + PT +DGTG++
Sbjct: 469 FGIAQDFILCLHREITDMIAI---EEAKVTGVEDPTNSDGTGLQ 509
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,102
Number of Sequences: 59808
Number of extensions: 516477
Number of successful extensions: 953
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 15
length of query: 356
length of database: 16,821,457
effective HSP length: 83
effective length of query: 273
effective length of database: 11,857,393
effective search space: 3237068289
effective search space used: 3237068289
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -