Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001383-TA|BGIBMGA001383-PA|IPR005886|UDP-glucose
4-epimerase, IPR001509|NAD-dependent epimerase/dehydratase
(356 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical p... 351 6e-97
Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical p... 350 8e-97
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 59 4e-09
U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 45 9e-05
AL032655-6|CAA21722.1| 462|Caenorhabditis elegans Hypothetical ... 43 3e-04
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 43 4e-04
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 42 9e-04
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 42 9e-04
U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical pr... 36 0.058
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 31 1.2
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 30 2.9
U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical p... 29 5.0
Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical
protein C47B2.6b protein.
Length = 349
Score = 351 bits (862), Expect = 6e-97
Identities = 169/350 (48%), Positives = 220/350 (62%), Gaps = 6/350 (1%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEK-KPEALKRIEELTG 63
+LVTG AG++GSHTV+ LL ++ +DN +NA E +LKR+ +LTG
Sbjct: 3 ILVTGAAGFIGSHTVLELLN-----SGYTVLCIDNFANAISVTDEHGNAISLKRVAQLTG 57
Query: 64 KTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLFE 123
K V F VD+ AL+++F + D +IH AALKAVGESV KPL+YY N+ + L +
Sbjct: 58 KDVPFQNVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSNNLVASLNLIQ 117
Query: 124 IMRKHGVYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSPYGKSKYFCEEIMKDLCVSDK 183
+ K+ V V+SSS TVYG P LPI E TG+ +T+PYG++KY E+I+ D+ ++
Sbjct: 118 MCLKYNVKNFVFSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQILIDVGKANP 177
Query: 184 KWAIISLRYFNPVGAHESGRIGEDPSGIPNNLMPYISQVAVGRLKELKVFGDDYPTADGT 243
+W ++ LRYFNPVGAH+SG IGEDP G+PNNLMPY+SQVA+G+L L ++GD + T DGT
Sbjct: 178 EWNVVLLRYFNPVGAHKSGLIGEDPKGVPNNLMPYVSQVAIGKLPVLTIYGDQFDTVDGT 237
Query: 244 GVRDYIHVCDLAAGHVQAIKLFHQPGFNGFHAINLGTGTGYSVLEMVAAFSNASGXXXXX 303
GVRDYIHV DLA GHV+A G G NLGTG GYSV +MV A SG
Sbjct: 238 GVRDYIHVVDLAKGHVKAFDRIKTVGNIGTEIYNLGTGVGYSVRQMVDALKKVSGRDIPV 297
Query: 304 XXXXXXXGDVTANVADVALATRSLGWRATRSLHDMCRDTWRWQEANPNGY 353
GDV + D +LA LGWRA L +MC D W WQ NP G+
Sbjct: 298 KIGVPRPGDVASVYCDPSLAQEKLGWRAETGLEEMCADLWNWQTKNPQGF 347
>Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical
protein C47B2.6a protein.
Length = 347
Score = 350 bits (861), Expect = 8e-97
Identities = 169/349 (48%), Positives = 220/349 (63%), Gaps = 6/349 (1%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELTGK 64
+LVTG AG++GSHTV+ LL ++ +DN +NA E +LKR+ +LTGK
Sbjct: 3 ILVTGAAGFIGSHTVLELLN-----SGYTVLCIDNFANAISDE-HGNAISLKRVAQLTGK 56
Query: 65 TVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLFEI 124
V F VD+ AL+++F + D +IH AALKAVGESV KPL+YY N+ + L ++
Sbjct: 57 DVPFQNVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSNNLVASLNLIQM 116
Query: 125 MRKHGVYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSPYGKSKYFCEEIMKDLCVSDKK 184
K+ V V+SSS TVYG P LPI E TG+ +T+PYG++KY E+I+ D+ ++ +
Sbjct: 117 CLKYNVKNFVFSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQILIDVGKANPE 176
Query: 185 WAIISLRYFNPVGAHESGRIGEDPSGIPNNLMPYISQVAVGRLKELKVFGDDYPTADGTG 244
W ++ LRYFNPVGAH+SG IGEDP G+PNNLMPY+SQVA+G+L L ++GD + T DGTG
Sbjct: 177 WNVVLLRYFNPVGAHKSGLIGEDPKGVPNNLMPYVSQVAIGKLPVLTIYGDQFDTVDGTG 236
Query: 245 VRDYIHVCDLAAGHVQAIKLFHQPGFNGFHAINLGTGTGYSVLEMVAAFSNASGXXXXXX 304
VRDYIHV DLA GHV+A G G NLGTG GYSV +MV A SG
Sbjct: 237 VRDYIHVVDLAKGHVKAFDRIKTVGNIGTEIYNLGTGVGYSVRQMVDALKKVSGRDIPVK 296
Query: 305 XXXXXXGDVTANVADVALATRSLGWRATRSLHDMCRDTWRWQEANPNGY 353
GDV + D +LA LGWRA L +MC D W WQ NP G+
Sbjct: 297 IGVPRPGDVASVYCDPSLAQEKLGWRAETGLEEMCADLWNWQTKNPQGF 345
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 59.3 bits (137), Expect = 4e-09
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELTGK 64
VL+TGG G++GS+ + + + + + D L A G K I E
Sbjct: 11 VLITGGCGFIGSNYINFTFNKWKN---TKFINYDKL-----AFGASPLHVEKEIRE--SP 60
Query: 65 TVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLFEI 124
F + + L + + + +D VIHFAA+ V ES + Q NI T TL E
Sbjct: 61 RYKFVEAALEDQPTLIKTLQENEVDMVIHFAAITHVDESYSDRIGTIQDNIISTTTLLES 120
Query: 125 MRK---HGVYKLVYSSSCTVYGE--PEYLPINESHPTGKSLTSPYGKSKYFCEEIMK 176
+ GV KLV+ S+ VYG+ + P +ES + + T+PY SK CE +++
Sbjct: 121 IVNSPYKGVKKLVHISTDEVYGDSFEDTTPKSES-ASLPNPTNPYAASKAACEMVIR 176
>U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical
protein F08F3.4 protein.
Length = 358
Score = 46.0 bits (104), Expect = 4e-05
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 71 VDIRCAEALDRIFENHNIDCVIHFAA-LKAVGESVEKPLEYYQVNINGTCTLFEIMRKHG 129
+DI +++ I N NID ++HF+A L AVGE+ PL QVN G + ++ KH
Sbjct: 87 LDILNQGSIEEIVVNKNIDTIVHFSALLSAVGET-NVPLA-LQVNCRGVENILQVAAKHK 144
Query: 130 VYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSPYGKSKYFCEEI 174
+ K+ S+ +G P N T + T+ YG SK + E +
Sbjct: 145 L-KVFIPSTIGAFG-PTTPRENTPDLTVQCPTTIYGVSKVYAERL 187
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 44.8 bits (101), Expect = 9e-05
Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 20/189 (10%)
Query: 6 LVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELTGKT 65
++ GG G++G+H + L Q G I+VVD C P+ K I ++
Sbjct: 5 VIVGGGGFLGAHVISAL---QKIGCKERIIVVDP-----C------PQEFKTI-KIDKSN 49
Query: 66 VHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLFEIM 125
+ + K + L+ I + V+H AA+ G + N+NGT L +
Sbjct: 50 ISYIKASFLDDKVLENIL--NGASAVVHLAAVGHTGLIAGDRKSVHNFNVNGTKQLIKQC 107
Query: 126 RKHGVYKLVYSSSCTV--YGEP-EYLPINESHPTGKSLTSPYGKSKYFCEEIMKDLCVSD 182
+ GV + +Y+SS V GEP + + ++ P K Y SK E + D
Sbjct: 108 KALGVKRFLYASSVAVSFIGEPLDNVTEDDPLPDPKKYLDFYSASKAEAETYVLSQSTPD 167
Query: 183 KKWAIISLR 191
K + R
Sbjct: 168 FKTVCLRFR 176
>AL032655-6|CAA21722.1| 462|Caenorhabditis elegans Hypothetical
protein Y6B3B.11 protein.
Length = 462
Score = 43.2 bits (97), Expect = 3e-04
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDG------DPLEIVVVDNLSNAYCAEGEKK-----PE 53
VL+TGGAG++ + V L E D + LE + +S E EK+
Sbjct: 47 VLITGGAGHLAENLVAKLEEMTRDSIRPKIREMLEKEMPAVISTKVDKEVEKRLPMYIQI 106
Query: 54 ALKRIEELTGKTVHFYKVDIRCAEALDRIFEN--HNIDCVIHFAALKAVGESVEKPLEYY 111
L + E G+ + + ++C+ + + +D V H AA+ G+
Sbjct: 107 VLVDVLEPRGRVLKHHVAFVKCSFDDECTMKTALEQVDTVYHLAAVGMTGQYARDRKACM 166
Query: 112 QVNINGTCTLFEIMRKHGVYKLVYSSSCTVY--GEPEYLPINE-SHPTGKSLTSPYGKSK 168
+N GT L R GV + +Y+SS V GEP Y E +P + Y +SK
Sbjct: 167 DINAVGTMNLLIWARNSGVQRFIYTSSVGVVFSGEPMYNATEEVGYP--DDFYNYYCESK 224
Query: 169 YFCEEIMK 176
E I++
Sbjct: 225 AHAERIVQ 232
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 42.7 bits (96), Expect = 4e-04
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEI-VVVDNLSNAYCAEGEKKPEALKRIEELTG 63
V++TGG G++GS+ V + + + + I ++ N AE + K + LT
Sbjct: 8 VVITGGCGFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAESVRNSPRYKLV--LT- 64
Query: 64 KTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLFE 123
DI+ A+ +FE + ID VIHFAA + E Q N+ E
Sbjct: 65 --------DIKNEAAILNVFEQNEIDTVIHFAADCTSTRCYNETAEAVQNNVLSFIQFLE 116
Query: 124 IMRKHG-VYKLVYSSSCTVYGEPE 146
+R +G + + V+ S+ VYG+ +
Sbjct: 117 TVRTYGKIKRFVHISTDEVYGDSD 140
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 41.5 bits (93), Expect = 9e-04
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 25/176 (14%)
Query: 3 RAVLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELT 62
+ +L+TGGAG+VGSH V L+ DG E++ +DN G K K +E
Sbjct: 137 KRILITGGAGFVGSHLVDKLM---LDGH--EVIALDNYFT-----GRK-----KNVEHWI 181
Query: 63 GKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLF 122
G +F V + ++ F +D + H A+ + + P++ + N GT +
Sbjct: 182 GHP-NFEMVH---HDVVNPYFV--EVDQIYHLASPASPPHYMYNPVKTIKTNTLGTINML 235
Query: 123 EIMRKHGVYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSP---YGKSKYFCEEIM 175
+ ++ L+ S+S VYG+PE P E++ + P Y + K E +M
Sbjct: 236 GLAKRVKATVLLASTS-EVYGDPEVHPQPETYWGHVNTIGPRACYDEGKRVAESLM 290
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 41.5 bits (93), Expect = 9e-04
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 25/176 (14%)
Query: 3 RAVLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNAYCAEGEKKPEALKRIEELT 62
+ +L+TGGAG+VGSH V L+ DG E++ +DN G K K +E
Sbjct: 137 KRILITGGAGFVGSHLVDKLM---LDGH--EVIALDNYFT-----GRK-----KNVEHWI 181
Query: 63 GKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKPLEYYQVNINGTCTLF 122
G +F V + ++ F +D + H A+ + + P++ + N GT +
Sbjct: 182 GHP-NFEMVH---HDVVNPYFV--EVDQIYHLASPASPPHYMYNPVKTIKTNTLGTINML 235
Query: 123 EIMRKHGVYKLVYSSSCTVYGEPEYLPINESHPTGKSLTSP---YGKSKYFCEEIM 175
+ ++ L+ S+S VYG+PE P E++ + P Y + K E +M
Sbjct: 236 GLAKRVKATVLLASTS-EVYGDPEVHPQPETYWGHVNTIGPRACYDEGKRVAESLM 290
>U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical
protein ZC449.6 protein.
Length = 327
Score = 35.5 bits (78), Expect = 0.058
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 102 ESVEKPLEY-YQVNINGTCTLFEIMRKHGVYKLVYSSSCTV--YGEPEY-LPINESHPTG 157
E +K EY Y N+ GT L E + GV + +YSSS V G+P Y +E +P
Sbjct: 58 EKAQKHREYVYAFNVTGTKFLIEKCKFFGVPRFIYSSSIAVVFVGKPIYNCDESEPYPLK 117
Query: 158 KSLTSPYGKSKYFCEEIMK 176
Y SK E ++
Sbjct: 118 SEYLDIYSSSKAEAEAFVR 136
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 6 LVTGGAGYVGSHTVITLLERQSDGDPLEIVVVD 38
++TGG G++G+H + L Q +GD + +VVD
Sbjct: 8 VITGGGGFLGAHLIAAL---QKNGDRTKCIVVD 37
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 48 GEKKPEALKRIEELTGKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKP 107
G++ A K +E+LTG+T F K R E + C + + + E K
Sbjct: 37 GDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKV 96
Query: 108 LEY--YQVNINGTCTLFEIMRKHGVYKLVYSSSCTVYGEPEYLPINES 153
EY Y+ N + T +++H + Y S +YG Y+ ++ +
Sbjct: 97 KEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRA 144
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 29.9 bits (64), Expect = 2.9
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 48 GEKKPEALKRIEELTGKTVHFYKVDIRCAEALDRIFENHNIDCVIHFAALKAVGESVEKP 107
G++ A K +E+LTG+T F K R E + C + + + E K
Sbjct: 37 GDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKV 96
Query: 108 LEY--YQVNINGTCTLFEIMRKHGVYKLVYSSSCTVYGEPEYLPINES 153
EY ++ N + T +++H + Y +YG Y+ +N +
Sbjct: 97 KEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRN 144
>U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical
protein C32D5.12 protein.
Length = 357
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 5 VLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDNLSNA 43
V VTGGAG VG + V LLE + EI ++D S +
Sbjct: 4 VAVTGGAGLVGRYVVQRLLENEQIA---EIRIIDRQSTS 39
>Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical
protein M04B2.4 protein.
Length = 527
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 RAVLVTGGAGYVGSHTVITLLERQSDGDPLEIVVVDN 39
RA +V G G GS T L ER D D ++VVV+N
Sbjct: 93 RAEIVIIGGGLSGSSTAFWLKERFRDED-FKVVVVEN 128
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,109,854
Number of Sequences: 27539
Number of extensions: 390806
Number of successful extensions: 774
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 20
length of query: 356
length of database: 12,573,161
effective HSP length: 82
effective length of query: 274
effective length of database: 10,314,963
effective search space: 2826299862
effective search space used: 2826299862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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