Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001382-TA|BGIBMGA001382-PA|IPR002100|Transcription
factor, MADS-box
(137 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 32 0.036
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 30 0.11
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 28 0.59
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 0.79
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 26 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 3.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 4.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 5.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 7.3
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 24 7.3
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 24 9.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 9.7
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 24 9.7
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 24 9.7
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 31.9 bits (69), Expect = 0.036
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 64 YDDRPSQSVPLDHCPMPDIADDGYASLQPKK---SPPSNGKKTKGRVKIKMEYIDNKLRR 120
+ D+ + + PL PD+A SL K SP +N K+TK I+ ++K RR
Sbjct: 214 FADQNAFTNPLSTFASPDLASVSSPSLSSYKGAQSPNANSKRTKATSAIRTAAEEDKRRR 273
Query: 121 YTTFSKRKTGIMKKQK 136
T S R I KK K
Sbjct: 274 NTAASAR-FRIKKKLK 288
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 30.3 bits (65), Expect = 0.11
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 113 YIDNKLRRYTTFSKRKTGIMKK 134
Y++++ +R TF+KRK GI KK
Sbjct: 27 YLEDRQKRQNTFTKRKAGIFKK 48
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 0.59
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 37 GGAGPLRPGMQPCPMPRAG 55
G P+ PGM P P P AG
Sbjct: 134 GALAPISPGMSPAPQPCAG 152
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 0.79
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI + I + R TF KRK G+ KK
Sbjct: 2 GRKKISIAPITDDRSRSVTFVKRKQGLYKK 31
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 75 DHCPMPDIADDGYASLQPKKSPPSNGK 101
D CP D A D + + P SNGK
Sbjct: 62 DQCPQSDTAKDKKTEFKQDEVPNSNGK 88
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 3.2
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 7 ARESRFGPSYMGLL-GEMPDMYSAGRPP-SALGGAGPLRPGMQP-CPMPRAGVKRPSDQC 63
A E P+ GL G MP + G+ SA + P P Q P + RPS
Sbjct: 92 AEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPP 151
Query: 64 YDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPS 98
+ +P P+P P KSPPS
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 22 EMPDMYSAGRPPSALGGAGPLRPGMQPCPMPR 53
+MP +Y+ AL AGP R P MPR
Sbjct: 88 QMPSVYNNAGNVGALPTAGPNRLANNPRVMPR 119
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 85 DGYASLQPKKSPPSNGKKTKGRVKIKM 111
DG +PKKS P N TK K+ +
Sbjct: 86 DGVLRFRPKKSGPKNDISTKVASKVSV 112
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 24.2 bits (50), Expect = 7.3
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 76 HCPMPDIA--DDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDN 116
H PD+ Y + KS NGKKT R K +M+ N
Sbjct: 453 HEDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRTKSRMQQFIN 495
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 24.2 bits (50), Expect = 7.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 1 MDAPGGARESR----FGPSYMGLLGEMPDM-YSAGRPPSALGGAGPLRPGMQP 48
+ PG AR + G + +GL G + + Y+A PP+ G P PG +P
Sbjct: 95 LSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAP-PPGFRP 146
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 65 DDRPSQSVPLDHCPMPDIADDGYASLQ--PKKSPPSNGK 101
+D S PLD CP+ D D ++ P + P S K
Sbjct: 184 EDDSQYSHPLDFCPIIDTEDQKVVAIDIPPVRRPLSKHK 222
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.8 bits (49), Expect = 9.7
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 14 PSYMGLLGEMPDMYSAGRPPSALGGAGPLRP---GMQPCPMPRAGVKRP 59
P G+ MP G P G P+ P GMQP R G+++P
Sbjct: 560 PQRTGMQPMMPQR--TGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQQP 606
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 9.7
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 50 PMPRAGVKRPSDQCYDDRPSQSVPL--DHCPMPDIADDGYASLQPKKS--PP 97
P P+ KRP+ PS SVP D P P A SL +S PP
Sbjct: 427 PTPQVSPKRPTYSRSSPLPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPP 478
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 23 MPDMYSAGRPPSALGGAGP-LRPGMQPCPMP 52
M +Y AG P + GA P PG P P
Sbjct: 605 MAKIYQAGGAPGGMPGAAPGAAPGAAPGAAP 635
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,589
Number of Sequences: 5004
Number of extensions: 30586
Number of successful extensions: 62
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 14
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)
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