Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001382-TA|BGIBMGA001382-PA|IPR002100|Transcription
factor, MADS-box
(137 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45658| Best HMM Match : Sushi (HMM E-Value=0) 66 7e-12
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 33 0.063
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0) 32 0.15
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 31 0.26
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 31 0.26
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 31 0.26
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 31 0.34
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 31 0.45
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015) 31 0.45
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 1.8
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56257| Best HMM Match : Extensin_2 (HMM E-Value=4.5) 28 2.4
SB_49039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 28 2.4
SB_38540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 2.4
SB_10133| Best HMM Match : SRF-TF (HMM E-Value=0.011) 28 2.4
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17) 28 3.1
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 27 4.2
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3) 27 4.2
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_21743| Best HMM Match : rve (HMM E-Value=4e-17) 27 4.2
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_37033| Best HMM Match : Annexin (HMM E-Value=0) 27 5.5
SB_24466| Best HMM Match : EGF (HMM E-Value=0.36) 27 5.5
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 27 5.5
SB_4537| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37) 27 5.5
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19) 27 5.5
SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6) 27 5.5
SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12) 27 7.3
SB_26340| Best HMM Match : TP2 (HMM E-Value=4.9) 27 7.3
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19) 27 7.3
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 27 7.3
SB_24579| Best HMM Match : rve (HMM E-Value=0.085) 27 7.3
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 26 9.6
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_28250| Best HMM Match : Pinin_SDK_N (HMM E-Value=3.8) 26 9.6
SB_23400| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
>SB_45658| Best HMM Match : Sushi (HMM E-Value=0)
Length = 875
Score = 66.5 bits (155), Expect = 7e-12
Identities = 33/51 (64%), Positives = 40/51 (78%), Gaps = 4/51 (7%)
Query: 84 DDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
DDG + + +K KKT+GRVKI+M++I NKLRRYTTFSKRKTGIMKK
Sbjct: 551 DDGASPVSDQKPK----KKTRGRVKIEMKFISNKLRRYTTFSKRKTGIMKK 597
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 35.9 bits (79), Expect = 0.012
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 21 GEMPDMYSAGRPPSAL-GGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQ-SVPL 74
G P G PP++ GG P RPGM P P + +PS Q P Q S PL
Sbjct: 583 GGFPPQQRPGAPPTSQPGGFPPQRPGMPPMSQPSSMHMQPSGQPQSTAPQQPSQPL 638
>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
Length = 333
Score = 33.5 bits (73), Expect = 0.063
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI++ I ++ R TF+KRK G+MKK
Sbjct: 2 GRKKIQISRIGDERNRQVTFTKRKFGLMKK 31
>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
Length = 1663
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRP 44
PG + + P++M G MPD S RPP G+ P P
Sbjct: 638 PGSSTTTSTSPAFMARAGTMPDSISVRRPPGM--GSAPATP 676
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 31.5 bits (68), Expect = 0.26
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRP-SQSVPLDHCPMPDIADDGYA 88
GR PS A P +P P P G RP + P + P P
Sbjct: 221 GRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 280
Query: 89 SLQPKKSPPSNGKKTKG 105
P + PPSN T+G
Sbjct: 281 PPPPTRGPPSNSFTTQG 297
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 31.5 bits (68), Expect = 0.26
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 32 PPSALGGAGPLRPGMQPCPMPRAGVKRPSD-------QCYDDRPSQSVPLDHCP 78
PP+ L + P+ P QP PMP G PSD QC + S + P CP
Sbjct: 908 PPAFLYPSIPVVPPAQPPPMPDMGYSCPSDCHFSCYPQCTPECCSTTPPTAQCP 961
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 31.5 bits (68), Expect = 0.26
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRP-SQSVPLDHCPMPDIADDGYA 88
GR PS A P +P P P G RP + P + P P
Sbjct: 133 GRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 192
Query: 89 SLQPKKSPPSNGKKTKG 105
P + PPSN T+G
Sbjct: 193 PPPPTRGPPSNSFTTQG 209
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 31.1 bits (67), Expect = 0.34
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 13 GPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKR---PSDQCYDDR-- 67
GP +G G PP GG GP P P P+P G P+ + R
Sbjct: 233 GPRMDHPMGHGGPPMDRGGPPMMHGGPGPRMPHSGPEPVPPGGPPMQGGPNMRGPHPRMD 292
Query: 68 PSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKG 105
P +S+ D PM D+ G P+ +P G G
Sbjct: 293 PPRSMSSDIRPMHDMGPRGSPQGPPQVTPGMPGPAGMG 330
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 30.7 bits (66), Expect = 0.45
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 40 GPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIAD-DGYASLQPKKSPPS 98
G L M P P A ++ P D+ RP + P PD D + P K P +
Sbjct: 116 GSLLEDMTPPVNPPAEIEDPDDK----RPEDWDEREKIPDPDAEKPDDWDEDAPVKIPDT 171
Query: 99 NGKKTKGRVKIKMEYI 114
N KK +G + + EY+
Sbjct: 172 NAKKPEGWLDDEPEYV 187
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 30.7 bits (66), Expect = 0.45
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 74 LDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYT 122
+ HC +P +GY+S+ +N + KG +K E L YT
Sbjct: 840 ISHCIVPKCEQEGYSSVASDLQKKANDFREKGNDAVKREEFQEALDWYT 888
>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
Length = 592
Score = 30.7 bits (66), Expect = 0.45
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 24 PDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIA 83
P + G PP++ A P PG P + +R Q + P Q+ PL PDI
Sbjct: 83 PPHVNQGPPPNSANQAPPPNPGPSPSFNSQGPPQRLPLQGFPSGPGQAQPLMPQQQPDI- 141
Query: 84 DDGYASLQPKK 94
G A+ KK
Sbjct: 142 -HGTANASTKK 151
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 48 PCPMPRAGVKRPSDQCYDDRPSQSVPLDHC-PMP 80
P P P AG K P D+ +RP Q V LD+ P+P
Sbjct: 49 PFPKPLAG-KLPKDRTVGERPFQVVGLDYAGPLP 81
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPS---DQCY 64
GE + S + RPP GG G P P P P V R S D C+
Sbjct: 1201 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRSSATMDSCF 1248
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSV 72
G PP + G G + P P PMP G+ +Q PS V
Sbjct: 262 GFPPMGMPGMGGMPPPGMPPPMPPGGMPPNMEQPPPPPPSSGV 304
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 41 PLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCP-MPDIADDGYASLQPKKSPPSN 99
PL P +P A VK P P S P + P +PD+ADD AS ++ ++
Sbjct: 204 PLTPEEEPAE-DHADVKEPP------HPVNSDPTEQAPGLPDLADDSSASKPRRRKRKNS 256
Query: 100 GKKTKGRVKIKME 112
KT + ME
Sbjct: 257 TPKTTRKPVRAME 269
>SB_56257| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
Length = 304
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 46 MQPCPMPRAGVKR-PSDQCYDDR-PSQSVPLDHCPMPDIADDGY 87
M CPM + P D C + P ++ P+D CPM D Y
Sbjct: 21 MDACPMDAYSMDAYPMDACPKEACPVEACPVDACPMDAYPVDAY 64
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 58 RPSDQC-YDDRPSQSVPLDHCPMPDIADDGY-ASLQPKKSPP 97
R +D C D P + P+D CPM + D Y PK++ P
Sbjct: 4 RSTDACPMDAYPMDACPMDACPMDAYSMDAYPMDACPKEACP 45
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 46 MQPCPMPRAGVKR-PSDQCYDDR-PSQSVPLDHCPMPDIADDGY 87
M+ CP+ + P D C + P ++ P+D CPM D Y
Sbjct: 106 MEACPVDACPMDAYPMDACPKEACPVEACPVDACPMDAYPVDAY 149
>SB_49039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 98 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMK 133
S+ KK R K K YI++ RR T SKRK + +
Sbjct: 7 SSAKKKTKRSKEKYCYIEDSKRRAITLSKRKATLFQ 42
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPL 74
GRPP+A + L + P+A V P DQ + + VP+
Sbjct: 728 GRPPTAQTASEILEHRTRALVTPKASVMEPQDQTRGQQATPQVPM 772
>SB_38540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 98 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMK 133
S+ KK R K K YI++ RR T SKRK + +
Sbjct: 18 SSAKKKTKRSKEKYCYIEDSKRRAITLSKRKATLFQ 53
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.3 bits (60), Expect = 2.4
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 2/107 (1%)
Query: 24 PDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIA 83
P S PP + G P GM P P+ A P P P++ P P
Sbjct: 331 PSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRP-PSSL 389
Query: 84 DDGYASLQPKKSPPSNGKKTKGRVKIKME-YIDNKLRRYTTFSKRKT 129
+ P + P G GR + + + +L+R KRK+
Sbjct: 390 GNPPPPPPPGRGAPPPGPMIPGRAGLLSQIQMGTQLKRVGDDEKRKS 436
>SB_10133| Best HMM Match : SRF-TF (HMM E-Value=0.011)
Length = 128
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 98 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMK 133
S+ KK R K K YI++ RR T SKRK + +
Sbjct: 5 SSAKKKTKRSKEKYCYIEDSKRRAITLSKRKATLFQ 40
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 81 DIADDGYASLQPKKSPPSNGKKTK 104
++AD GY S + + SPPS KK +
Sbjct: 298 EVADTGYNSSESRGSPPSPAKKQR 321
>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
Length = 634
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 49 CPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASL 90
C P A ++ CYD+ Q +PL C + D G+ S+
Sbjct: 100 CEKPIADTLASTEACYDEAEKQGLPL-FCALNRRFDPGFRSI 140
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 22 EMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPS 69
E P +Y PS + P P + P P++ K PSD +PS
Sbjct: 1588 ESPQVYDEDGNPSTAVKSEP-NPSLDEFPAPKSAEKAPSDTDCQAKPS 1634
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPS 60
GE + S + RPP GG G P P P P V R S
Sbjct: 2983 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRRS 3023
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 41 PLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDH 76
P QP PM A V++ S DDR + +DH
Sbjct: 302 PTTAPRQPSPMAPAPVQKESPPLTDDRKDEEQGIDH 337
>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 85 DGYASLQPKKSPPSNGKKTKGRVKIKMEYIDN 116
DG ASL+PK + SN + KG E ID+
Sbjct: 578 DGIASLRPKDTAQSNKRYGKGENDNSKEQIDD 609
>SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPS 60
GE + S + RPP GG G P P P P V R S
Sbjct: 727 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRRS 767
>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPS 60
GE + S + RPP GG G P P P P V R S
Sbjct: 884 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRRS 924
>SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)
Length = 491
Score = 27.5 bits (58), Expect = 4.2
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 46 MQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKG 105
++P P G +RPS + D P L P+PD D + S +P PP ++ G
Sbjct: 417 LRPVPHLPDG-QRPSPRPVPD-PPDGQHLSPRPVPDPPDGQHLSPRPVPDPPDGQRQGPG 474
Query: 106 RVKIKMEYI 114
I+ + +
Sbjct: 475 LKGIRQDLL 483
>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPS 60
GE + S + RPP GG G P P P P V R S
Sbjct: 1110 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRRS 1150
>SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPS 60
GE + S + RPP GG G P P P P V R S
Sbjct: 778 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRRS 818
>SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)
Length = 865
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPS 60
GE + S + RPP GG G P P P P V R S
Sbjct: 810 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRRS 850
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.1 bits (57), Expect = 5.5
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 14 PSYMGLLGEMPDMYSAGRP--PSALGGAG-PLRPGMQPCPMPRAGVKRPSDQCYDDRPSQ 70
P G G+ + S GRP P G G P PG+ P PR P D D
Sbjct: 863 PGDNGPRGKKGEAGSDGRPGFPGESGANGLPGPPGLAGSPGPRGPNGEPGDPGMDGDKGP 922
Query: 71 SVPLDHCP 78
P+D P
Sbjct: 923 PGPVDAGP 930
>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
Length = 287
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMP 52
PGG +G M G P M PP GP +PG P PMP
Sbjct: 7 PGGY--GMYGYGGMPRPGAPPPMPQQP-PPLGFDAMGPPQPGGMPMPMP 52
>SB_24466| Best HMM Match : EGF (HMM E-Value=0.36)
Length = 148
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 55 GVKRP-SDQCYDDRPSQSVPL----DHCPMPDIADDGYASLQPKKSPPSNGKKTKGRV 107
G+K +D CYD+ P + P DH Y SL+P PP + K K V
Sbjct: 66 GIKADDADHCYDN-PIEMTPRAADSDHTYEEVFQSSTYESLKPVAGPPHDAAKQKDYV 122
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 27.1 bits (57), Expect = 5.5
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 32 PPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQ 91
PP +L RPGM P P +RPS C RP+ L + P PD+ D S
Sbjct: 1590 PPPSLHIRPSDRPGMTATPPPPLPTRRPS-SC--SRPAPQ--LSYRP-PDVT-DVLCSNS 1642
Query: 92 PKKSPPSNGK 101
P+ P G+
Sbjct: 1643 PRHHQPLYGR 1652
>SB_4537| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.37)
Length = 593
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 50 PMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYAS 89
P P A K+P ++ + L HCP+PD +DG+ +
Sbjct: 12 PFPNAA-KKPKRMHLEEDENDG--LFHCPVPDCHNDGFGT 48
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 27.1 bits (57), Expect = 5.5
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 32 PPSALGGAGPLRP----GMQPCPMPR----AGVKRPSDQCYDDRPSQSVPLDHCPMPDIA 83
PP G P+ P G P P R A V D Y P Q + P+P +
Sbjct: 120 PPQRDAGYAPVPPQRDAGYAPVPPQRDAKYAPVPPQRDAGYAPVPPQR-DAGYAPVPPLR 178
Query: 84 DDGYASLQPKK 94
D GYA + P++
Sbjct: 179 DVGYAPVPPQR 189
>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
Length = 698
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 17 MGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKR 58
+ + GE + S + RPP GG G P P P P V R
Sbjct: 564 VAISGESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVR 606
>SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6)
Length = 540
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 50 PMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYAS 89
P P A K+P ++ + L HCP+PD +DG+ +
Sbjct: 12 PFPNAA-KKPKRMHLEEDENDG--LFHCPVPDCHNDGFGT 48
>SB_59248| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-12)
Length = 359
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 57 KRPSDQCYDDRPSQSVPLDHCPM 79
K C + P++SVP DHC M
Sbjct: 43 KEVDKHCAEACPNRSVPCDHCKM 65
>SB_26340| Best HMM Match : TP2 (HMM E-Value=4.9)
Length = 290
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 79 MPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTG 130
+P I++ + SL KS S KK R+K +Y DNK +R G
Sbjct: 61 LPLISEGSFTSLVSSKSNKSRRKKD--RIKTIKQYRDNKQASNVKIKRRGGG 110
>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
Length = 1065
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGV 56
GE + S + RPP GG G P + P P P V
Sbjct: 907 GESSSLPSPSNRPPVCEGGEGSPGPAVSPSPSPSMAV 943
>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1963
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 31 RPPSALGGAGPLRPGMQPCPMPRAGVKRPS 60
RPP GG G P P P P V R S
Sbjct: 1919 RPPVREGGEGSPGPAASPSPSPSKAVVRRS 1948
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 40 GPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCP 78
GPL P P P+ G + PS + + RP P D P
Sbjct: 320 GPLAPAESP---PKTGTEEPSPKTGEKRPPGLHPTDSPP 355
>SB_24579| Best HMM Match : rve (HMM E-Value=0.085)
Length = 318
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 21 GEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKR 58
GE + S + RPP GG G P P P P V R
Sbjct: 185 GESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVR 223
>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 26 MYSAGRPPSAL-----GGAGPLRPGMQPCPMPR 53
MY +G+P + L GG PL PG P P R
Sbjct: 1145 MYMSGQPSANLTTATDGGKPPLSPGRPPAPKKR 1177
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 28 SAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQC 63
SA +PPS L A P PR G++ S C
Sbjct: 999 SAVKPPSRLNNAATSSKSNTVKPTPRLGIEHHSKPC 1034
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 26.2 bits (55), Expect = 9.6
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 4 PGGARESRFGP-SYMGLLGEMPDMYSA-GRPP----SALGGAGPLRPGMQPCPMPRAGVK 57
P G RE + P S G G PD RPP GP P QP PR G +
Sbjct: 341 PAGGREPQDRPWSNDGPFGRPPDDRGPQDRPPWDGPREQDFRGPRDPRAQPAHNPRPGPQ 400
Query: 58 RPSDQCYDDRPSQSVP 73
P D RP P
Sbjct: 401 DPRGP-QDRRPPNEQP 415
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 26.2 bits (55), Expect = 9.6
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 2 DAPGGARESRFGPSYMGLLGEMPDMYSAGR-PPSALGGAGPLRPGMQPCPMPR-----AG 55
D P + E+ G G P+ + PP AG + P PCP+ +G
Sbjct: 3075 DKPRASVEANCQICRAGTYGNHPERLNCTICPPGYFCPAGTIGPHKNPCPLGHFCPEGSG 3134
Query: 56 VKRP-SDQCYDDRPSQSVPLD--HCPMPDIADD--GYASLQPKKSPPSN 99
K P S Y DR + P D C D D G A L+ S S+
Sbjct: 3135 DKNPCSPGHYGDRELATSPSDCKKCSAGDFNDQPGGKACLRCGSSSTSD 3183
>SB_28250| Best HMM Match : Pinin_SDK_N (HMM E-Value=3.8)
Length = 296
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 66 DRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFS 125
D+ ++ LD D D+ QP P + GK +G+V+ + ++ + YT S
Sbjct: 82 DKQLAALLLDISDGYDSGDEDSPPQQPSNVPNTKGKDRQGKVQYEDFTLEEFVAGYTQIS 141
Query: 126 KR 127
R
Sbjct: 142 LR 143
>SB_23400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 64 YDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTT 123
+ D ++++ LD P +AD G++ S+GK+ K R K ++++ +L +
Sbjct: 178 HGDLAARNILLDSHANPKLADFGFSRDNKASKVLSSGKQDKQR-KFPVKWMALELLHHNI 236
Query: 124 FSKR 127
F+++
Sbjct: 237 FTRK 240
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 51 MPRAGVKRPSDQCYDDRPSQSV-PLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVK 108
+P A K +D +D Q P +PD + D A+ Q K P S + T+ + K
Sbjct: 3224 LPEAPAKDKADSVIEDGGVQEKKPECDLQVPDSSIDSTAATQASKDPTSCEETTQAKTK 3282
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 26.2 bits (55), Expect = 9.6
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 38 GAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPP 97
G PL P + G +RP++ P DI+ YASL+ +S P
Sbjct: 1052 GTAPLEPTQESKENSNIG-ERPTNLPTHTSPELKPKSPDSNDDDISQHEYASLKTVQSSP 1110
Query: 98 SNGKK 102
S G++
Sbjct: 1111 SEGRQ 1115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,613,896
Number of Sequences: 59808
Number of extensions: 272209
Number of successful extensions: 655
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 81
length of query: 137
length of database: 16,821,457
effective HSP length: 75
effective length of query: 62
effective length of database: 12,335,857
effective search space: 764823134
effective search space used: 764823134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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