Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001382-TA|BGIBMGA001382-PA|IPR002100|Transcription
factor, MADS-box
(137 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical pr... 77 6e-15
Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical pr... 33 0.055
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 33 0.055
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 33 0.055
U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein. 33 0.055
U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein. 33 0.055
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 30 0.51
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 30 0.51
Z78200-9|CAB01583.2| 368|Caenorhabditis elegans Hypothetical pr... 30 0.51
U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical p... 30 0.51
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 0.68
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 30 0.68
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 30 0.68
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 29 1.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 1.2
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 1.6
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 1.6
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 29 1.6
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 1.6
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 1.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 1.6
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 28 2.1
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 28 2.1
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 28 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 2.7
AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical ... 28 2.7
Z83225-1|CAB05721.1| 324|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z81045-6|CAB02820.1| 324|Caenorhabditis elegans Hypothetical pr... 27 4.8
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 27 4.8
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 27 4.8
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 27 4.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 27 4.8
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 26 8.3
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 26 8.3
AL132948-30|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 26 8.3
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 26 8.3
AF043704-5|AAK21474.1| 128|Caenorhabditis elegans Hypothetical ... 26 8.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 26 8.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 26 8.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 26 8.3
>Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical
protein D1081.2 protein.
Length = 327
Score = 76.6 bits (180), Expect = 6e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Query: 99 NGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
NGKKTKGRVKIKMEYI+NKLRRYTTFSKRKTGIMKK
Sbjct: 40 NGKKTKGRVKIKMEYINNKLRRYTTFSKRKTGIMKK 75
>Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical
protein W10D5.1 protein.
Length = 340
Score = 33.5 bits (73), Expect = 0.055
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI++ I ++ R TF+KRK G+MKK
Sbjct: 2 GRKKIQITRIQDERNRQVTFTKRKFGLMKK 31
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 33.5 bits (73), Expect = 0.055
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 13 GPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSV 72
GP + MP M S PP + GA P G P P P GV P P +
Sbjct: 132 GPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAP--GVYMPPPGMPGAYPPPRM 189
Query: 73 PLDHCP 78
P+ H P
Sbjct: 190 PIGHGP 195
Score = 27.5 bits (58), Expect = 3.6
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 23 MPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMP 80
MP M S PPS G P+ GM P P G P + Y P+ V + MP
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMP-PRGMPGA-YPPPRGYPPAPAPGVYMPPPGMP 181
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 33.5 bits (73), Expect = 0.055
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 13 GPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSV 72
GP + MP M S PP + GA P G P P P GV P P +
Sbjct: 132 GPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAP--GVYMPPPGMPGAYPPPRM 189
Query: 73 PLDHCP 78
P+ H P
Sbjct: 190 PIGHGP 195
Score = 27.5 bits (58), Expect = 3.6
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 23 MPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMP 80
MP M S PPS G P+ GM P P G P + Y P+ V + MP
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMP-PRGMPGA-YPPPRGYPPAPAPGVYMPPPGMP 181
>U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein.
Length = 340
Score = 33.5 bits (73), Expect = 0.055
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI++ I ++ R TF+KRK G+MKK
Sbjct: 2 GRKKIQITRIQDERNRQVTFTKRKFGLMKK 31
>U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein.
Length = 340
Score = 33.5 bits (73), Expect = 0.055
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI++ I ++ R TF+KRK G+MKK
Sbjct: 2 GRKKIQITRIQDERNRQVTFTKRKFGLMKK 31
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 30.3 bits (65), Expect = 0.51
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 45 GMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTK 104
G C + K + DD +V ++ CP P D Y + + K +N +T
Sbjct: 167 GFAVCGIQARVEKNETQAGIDDTGVNNVQVECCPAPYDCDASYEAKEVDKYQNNNDYETS 226
Query: 105 GRVKIKMEY 113
+V +K +Y
Sbjct: 227 HKVLVKSKY 235
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 30.3 bits (65), Expect = 0.51
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 45 GMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTK 104
G C + K + DD +V ++ CP P D Y + + K +N +T
Sbjct: 167 GFAVCGIQARVEKNETQAGIDDTGVNNVQVECCPAPYDCDASYEAKEVDKYQNNNDYETS 226
Query: 105 GRVKIKMEY 113
+V +K +Y
Sbjct: 227 HKVLVKSKY 235
>Z78200-9|CAB01583.2| 368|Caenorhabditis elegans Hypothetical
protein T04H1.6 protein.
Length = 368
Score = 30.3 bits (65), Expect = 0.51
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 32 PPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADD 85
P LGG+G + PG P PMP+ + P ++P S +++C + DD
Sbjct: 89 PVFPLGGSGIVEPGTIPPPMPQ--TQAP------EKPDNSYAINYCDKREFPDD 134
>U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical
protein C28C12.1 protein.
Length = 200
Score = 30.3 bits (65), Expect = 0.51
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 34 SALGGAGPLRPGMQPC--PMPRAGVKRPSDQCYDDRPSQSVPL-DHCPMPDIADDGYASL 90
S L G +P QP P+ K+ ++ +++ ++ P + P+ D +
Sbjct: 31 SRLSPNGTPKPASQPALSPLDLTPAKKVEEKVIEEKKVENNPKKEEEPVKDGKE--VVQD 88
Query: 91 QPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
QPKKS K + I DNK + SK K+ KQK
Sbjct: 89 QPKKSSREKDMMLKEKTAIDFSGDDNKKKETMQVSKTKSARNNKQK 134
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 0.68
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYD-DRPSQSVPLDH 76
GE D Y+A A GG GP + P P P A + P Q + P P +H
Sbjct: 4 GEDADKYAASVAEVAHGGGGPKKDDQVP-PAPDASMPTPQQQQQQPNLPPPQQPYEH 59
Score = 29.5 bits (63), Expect = 0.89
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 32 PPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPS------QSVPLDHCPMPDIADD 85
PP P P P+P +++ DD+PS Q P H P P
Sbjct: 182 PPKEGPNGNPATPSSSSQPIPSPSASSIAEESLDDKPSGTKMPAQPPPQQHPPPPQ--PQ 239
Query: 86 GYASLQPKKSPPS 98
S P ++PPS
Sbjct: 240 QIMSPMPPQAPPS 252
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 36 LGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMP 80
+GG GP PG P P G P Q P DHCP P
Sbjct: 259 IGGQGP--PGDAGGPGPVGGQGPPGPQGPQGPPGDEGSCDHCPEP 301
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 36 LGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMP 80
+GG GP PG P P G P Q P DHCP P
Sbjct: 259 IGGQGP--PGDAGGPGPVGGQGPPGPQGPQGPPGDEGSCDHCPEP 301
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 29.1 bits (62), Expect = 1.2
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 3 APGGARESRFGPSYMGLLGEM--PDMYSAGRPPSALGGA--GPLRP-GMQPCPMPRAGVK 57
APG + GP +G G P + P GG GP P G P G
Sbjct: 250 APGAPGQVVAGPGSVGPPGPQGPPGLAGPDGQPGHGGGGQPGPQGPPGDDGHPGEDGGAG 309
Query: 58 RPSDQCYDDRPSQSVPLDHCPMPDIADDGY 87
P D S DHCP P +A GY
Sbjct: 310 GPGQPGQDGGSGGSGACDHCPPPRVA-PGY 338
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 1.2
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ 62
P G F PS G P ++ +G PPS G GP P P G PS+
Sbjct: 147 PSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSG-GPPGPFGPSGAPPSGGPPGPFNPSEA 205
Query: 63 CYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNG 100
P+ P D P + P +PPS G
Sbjct: 206 PPSGGPTG--PFDPSGAPP-SGGPPGPFNPSGAPPSGG 240
Score = 29.1 bits (62), Expect = 1.2
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ 62
P G F PS G P + +G PPS G GP P P G PS
Sbjct: 462 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG-GPPGPFNPSGAPPSGGPPGPFDPSGA 520
Query: 63 CYDDRPSQSVPLDHCPMPDIADDGYASL--QPKKSPPS 98
P +P D P+P + + + +PK S P+
Sbjct: 521 PPSGMPPVPLPTD-LPIPSESPSFFQWIFGRPKPSGPA 557
Score = 28.7 bits (61), Expect = 1.6
Identities = 26/97 (26%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQC 63
P G FGPS G P ++ P + G GP P P G PS
Sbjct: 177 PSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAP 236
Query: 64 YDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNG 100
P P D P + P +PPS G
Sbjct: 237 PSGGPPG--PFDPSGAPP-SGGPPGPFNPSGAPPSGG 270
Score = 27.9 bits (59), Expect = 2.7
Identities = 30/99 (30%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ 62
P G F PS G P + +G PPS G GP P P P G P D
Sbjct: 312 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG-GPPGPFNPSGAP---PSGGPPGPFDP 367
Query: 63 CYDDRPSQSVPLDHCPMPDIADDG-YASLQPKKSPPSNG 100
PS P P G P +PPS G
Sbjct: 368 S-GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGG 405
Score = 27.1 bits (57), Expect = 4.8
Identities = 30/99 (30%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ 62
P G F PS G P ++ +G PPS G GP P P P G P D
Sbjct: 237 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG-GPPGPFDPSGAP---PSGGPPGPFDP 292
Query: 63 CYDDRPSQSVPLDHCPMPDIADDG-YASLQPKKSPPSNG 100
PS P P G P +PPS G
Sbjct: 293 S-GAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGG 330
Score = 26.2 bits (55), Expect = 8.3
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ 62
P G F PS G P ++ +G PPS G GP P P P G P +
Sbjct: 402 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG-GPPGPFNPSGAP---PSGGPPGPFNP 457
Query: 63 CYDDRPSQSVPLDHCPMPDIADDG-YASLQPKKSPPSNG 100
PS P P G P +PPS G
Sbjct: 458 S-GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGG 495
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 41 PLRPGMQPCPMPRAGVKRPSDQCYDDRPS 69
P P PCP P + RPS C RPS
Sbjct: 73 PPPPPPMPCPPPPPPMPRPSCPCMMQRPS 101
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 57 KRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDN 116
K S + +++P+ + P A++ + + +KSP S KKT K K
Sbjct: 1794 KEKSPEKVEEKPASPTKKEKTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPE 1853
Query: 117 KLRRYTTFSKRKTGIMKKQK 136
+ + T K G KK+K
Sbjct: 1854 EKPKSPTPKKSPPGSPKKKK 1873
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 28.7 bits (61), Expect = 1.6
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 14 PSYMGLLGEMPDMYSAGRP-PSALGGAGPLR--PGMQPCPMPRAGVKRPSDQCYDDRPSQ 70
P G GEM G P P GAG + PG Q P P +P D +
Sbjct: 252 PGPPGRQGEMGPQGPPGPPGPRGKDGAGGEKGAPGDQGNPGPYGKPGQPGAPGPDGSAGE 311
Query: 71 SVPLDHCPMP 80
DHCP P
Sbjct: 312 KGGCDHCPPP 321
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 57 KRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDN 116
K S + +++P+ + P A++ + + +KSP S KKT K K
Sbjct: 1794 KEKSPEKVEEKPASPTKKEKTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPE 1853
Query: 117 KLRRYTTFSKRKTGIMKKQK 136
+ + T K G KK+K
Sbjct: 1854 EKPKSPTPKKSPPGSPKKKK 1873
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 57 KRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDN 116
K S + +++P+ + P A++ + + +KSP S KKT K K
Sbjct: 1794 KEKSPEKVEEKPASPTKKEKTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPE 1853
Query: 117 KLRRYTTFSKRKTGIMKKQK 136
+ + T K G KK+K
Sbjct: 1854 EKPKSPTPKKSPPGSPKKKK 1873
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 57 KRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKMEYIDN 116
K S + +++P+ + P A++ + + +KSP S KKT K K
Sbjct: 1794 KEKSPEKVEEKPASPTKKEKTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPE 1853
Query: 117 KLRRYTTFSKRKTGIMKKQK 136
+ + T K G KK+K
Sbjct: 1854 EKPKSPTPKKSPPGSPKKKK 1873
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 1 MDAPGGARESRFGPSYMGL-----LGEMPD-MYSAGRPPSALGGAGPLRPGMQP 48
M+ A +SR+ P+ GL G+ MYS+G P GG G + P QP
Sbjct: 1746 MNPQMNANQSRYMPNGPGLGQSGAPGQQQQPMYSSGMPMQRPGGLGGMNPQQQP 1799
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 1 MDAPGGARESRFGPSYMGL-----LGEMPD-MYSAGRPPSALGGAGPLRPGMQP 48
M+ A +SR+ P+ GL G+ MYS+G P GG G + P QP
Sbjct: 1735 MNPQMNANQSRYMPNGPGLGQSGAPGQQQQPMYSSGMPMQRPGGLGGMNPQQQP 1788
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 13 GPS--YMGLLGEMPDMYSAGRPPSALGGAGPLR--PGMQPCPMPRAGVKRPSDQCYDDRP 68
GPS MG++G P + + GG GP + P P P+P + + Q +P
Sbjct: 139 GPSGHLMGMVGGPPPQHMMQQQ----GGGGPPQFVPNSSPMPLPPQQIMQVQHQQQHQQP 194
Query: 69 SQSVPLDHCPMP 80
S + P+P
Sbjct: 195 PPSQQIQQPPIP 206
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 28.3 bits (60), Expect = 2.1
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 13 GPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSV 72
GPS GL +P + S G PP G A + P P+ ++ S D S SV
Sbjct: 849 GPSDFGLAHALPQVPSIGSPP---GSASSMVAHTAPGPL-KSHRNVESGHAPADFGSGSV 904
Query: 73 -PLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGR 106
PL P P G P S S+ + GR
Sbjct: 905 EPLGSPPGPQTRPIGTGQPLPPTSVVSDSTSSLGR 939
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 2.7
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ-----CYDDRPSQSVPLD 75
G +P + PP GG P+ G P P P G P P P
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 792
Query: 76 HCPMPDIADDGYASLQPKKSPPSNGKKTK 104
PM + D L PKK P +G K
Sbjct: 793 FAPMAPVIPD---YLPPKKVPKVDGPMRK 818
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 2.7
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ-----CYDDRPSQSVPLD 75
G +P + PP GG P+ G P P P G P P P
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 792
Query: 76 HCPMPDIADDGYASLQPKKSPPSNGKKTK 104
PM + D L PKK P +G K
Sbjct: 793 FAPMAPVIPD---YLPPKKVPKVDGPMRK 818
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 2.7
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ-----CYDDRPSQSVPLD 75
G +P + PP GG P+ G P P P G P P P
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 375
Query: 76 HCPMPDIADDGYASLQPKKSPPSNGKKTK 104
PM + D L PKK P +G K
Sbjct: 376 FAPMAPVIPD---YLPPKKVPKVDGPMRK 401
>AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical
protein W02F12.5 protein.
Length = 463
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/92 (20%), Positives = 34/92 (36%)
Query: 35 ALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKK 94
A+ A P +P P V RP P +VP+ +P D +A +
Sbjct: 174 AVTAAAPPKPVSGDIPKSAPPVARPPSTPSSSTPVGAVPVTRVVVPKGVDPSHAITGARD 233
Query: 95 SPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSK 126
+ + R+ +++ N TTF++
Sbjct: 234 EVRVKANRMRMRIAQRLKDAQNTYAMLTTFNE 265
>Z83225-1|CAB05721.1| 324|Caenorhabditis elegans Hypothetical
protein F42H11.1 protein.
Length = 324
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 3 APGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRP 44
APGG + P+Y L G D Y A GG GP P
Sbjct: 76 APGGTHD----PNYQTLAGIGNDCYEKKDGAPAAGGGGPAPP 113
>Z81045-6|CAB02820.1| 324|Caenorhabditis elegans Hypothetical
protein F42H11.1 protein.
Length = 324
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 3 APGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRP 44
APGG + P+Y L G D Y A GG GP P
Sbjct: 76 APGGTHD----PNYQTLAGIGNDCYEKKDGAPAAGGGGPAPP 113
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 27.1 bits (57), Expect = 4.8
Identities = 25/86 (29%), Positives = 29/86 (33%)
Query: 14 PSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVP 73
P G G D AG P A P PG + P P +P Q P+QS P
Sbjct: 157 PGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEP 216
Query: 74 LDHCPMPDIADDGYASLQPKKSPPSN 99
L + D G A P N
Sbjct: 217 LTPGAPGEAGDAGPAGPPGPPGAPGN 242
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQP 48
P G R P +G GE AGR P A G GP P +P
Sbjct: 163 PAGGNGRRGPPGPVGGPGEQGPQGDAGR-PGAAGRPGPAGPRGEP 206
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQP 48
P G R P +G GE AGR P A G GP P +P
Sbjct: 157 PAGGNGRRGPPGPVGGPGEQGPQGDAGR-PGAAGRPGPAGPRGEP 200
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 27.1 bits (57), Expect = 4.8
Identities = 25/86 (29%), Positives = 29/86 (33%)
Query: 14 PSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVP 73
P G G D AG P A P PG + P P +P Q P+QS P
Sbjct: 157 PGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEP 216
Query: 74 LDHCPMPDIADDGYASLQPKKSPPSN 99
L + D G A P N
Sbjct: 217 LTPGAPGEAGDAGPAGPPGPPGAPGN 242
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 26.2 bits (55), Expect = 8.3
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 22 EMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPD 81
++P SA R L P RP P P+P + + S + P+ S LD P P
Sbjct: 215 DIPQATSATRLARPLAPP-PARPAAPPPPVPTPSIAQMSSRF--QSPAISRTLDDAPPPP 271
Query: 82 IADDGYASLQPKKS----PPSN 99
S+ P S PPS+
Sbjct: 272 PRIASKTSVAPTSSRAPLPPSS 293
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 26.2 bits (55), Expect = 8.3
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 22 EMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPD 81
++P SA R L P RP P P+P + + S + P+ S LD P P
Sbjct: 217 DIPQATSATRLARPLAPP-PARPAAPPPPVPTPSIAQMSSRF--QSPAISRTLDDAPPPP 273
Query: 82 IADDGYASLQPKKS----PPSN 99
S+ P S PPS+
Sbjct: 274 PRIASKTSVAPTSSRAPLPPSS 295
>AL132948-30|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 78 PMPDIADDGYASLQPKKSPPSNGKKTKGRVKIKME 112
P + DD SLQ + P G K K R+K +++
Sbjct: 385 PQGHVLDDRMKSLQRRNMLPIGGDKEKRRIKNRLK 419
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 26.2 bits (55), Expect = 8.3
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 6 GARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQ 47
GA+ ++FG G G P Y A PP A G P G Q
Sbjct: 1052 GAQGTQFGAQ--GAQGPPPASYGAPTPPQASYGPAPGAHGYQ 1091
>AF043704-5|AAK21474.1| 128|Caenorhabditis elegans Hypothetical
protein W01B11.1 protein.
Length = 128
Score = 26.2 bits (55), Expect = 8.3
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 44 PGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKT 103
P +Q P G RP+ ++ P S P + + K S PSNGK+
Sbjct: 18 PPVQQPPAVAPGASRPAPAPSNELPPASEAKKFQVQP-AKKASKSKSKSKDSSPSNGKEK 76
Query: 104 KGRVK 108
K R K
Sbjct: 77 KKRTK 81
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 26.2 bits (55), Expect = 8.3
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYAS 89
G PP A G+ P P P PR G P P P P P A
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPP 300
Query: 90 LQPKKSPPS 98
P+ SPP+
Sbjct: 301 PPPRGSPPT 309
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRP 59
G P +AG PP G+ P P P P P G P
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVP 73
G P + PP G P G P P PRAG P P+ S+P
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSP-PPPRAGSPPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 26.2 bits (55), Expect = 8.3
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYAS 89
G PP A G+ P P P PR G P P P P P A
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPP 321
Query: 90 LQPKKSPPS 98
P+ SPP+
Sbjct: 322 PPPRGSPPT 330
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRP 59
G P +AG PP G+ P P P P P G P
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVP 73
G P + PP G P G P P PRAG P P+ S+P
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSP-PPPRAGSPPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 26.2 bits (55), Expect = 8.3
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYAS 89
G PP A G+ P P P PR G P P P P P A
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPP 306
Query: 90 LQPKKSPPS 98
P+ SPP+
Sbjct: 307 PPPRGSPPT 315
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRP 59
G P +AG PP G+ P P P P P G P
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVP 73
G P + PP G P G P P PRAG P P+ S+P
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSP-PPPRAGSPPPPPPPRGSPPTGSLP 319
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,025,964
Number of Sequences: 27539
Number of extensions: 203442
Number of successful extensions: 587
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 94
length of query: 137
length of database: 12,573,161
effective HSP length: 74
effective length of query: 63
effective length of database: 10,535,275
effective search space: 663722325
effective search space used: 663722325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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