GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001382-TA|BGIBMGA001382-PA|IPR002100|Transcription
factor, MADS-box
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.095
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   0.89 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.095
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 80   PDIADD-GYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRK 128
            PD+ D+ GY +   +K PP  G       +IK   +   +R ++T+  R+
Sbjct: 1637 PDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTWDPRR 1686


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 101 KKTKGRVKIKMEYIDNKLRRYTTFSKRKT 129
           ++T+G +K+ +E +      YT  +KRKT
Sbjct: 53  EETRGVLKVFLENVIRDAVTYTEHTKRKT 81


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,946
Number of Sequences: 429
Number of extensions: 2513
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)