Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001382-TA|BGIBMGA001382-PA|IPR002100|Transcription
factor, MADS-box
(137 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04100.1 68416.m00434 MADS-box family protein contains Pfam p... 46 7e-06
At1g17310.1 68414.m02110 MADS-box protein (AGL100) similar to tr... 42 1e-04
At3g30260.1 68416.m03823 MADS-box protein (AGL79) similar to GB:... 42 2e-04
At3g61120.1 68416.m06840 MADS-box protein (AGL13) 40 5e-04
At1g72350.1 68414.m08369 MADS-box protein (AGL60) contains Pfam ... 40 5e-04
At1g26310.1 68414.m03209 MADS-box protein, putative strong simil... 40 5e-04
At2g45650.1 68415.m05676 MADS-box protein (AGL6) 40 8e-04
At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 / FR... 39 0.001
At2g24840.1 68415.m02971 MADS-box family protein 39 0.001
At5g23260.2 68418.m02722 MADS-box protein, putative 38 0.002
At5g23260.1 68418.m02721 MADS-box protein, putative 38 0.002
At2g03710.3 68415.m00329 MADS-box protein (AGL3) 38 0.002
At2g03710.2 68415.m00331 MADS-box protein (AGL3) 38 0.002
At2g03710.1 68415.m00330 MADS-box protein (AGL3) 38 0.002
At2g03060.1 68415.m00259 MADS-box family protein 38 0.002
At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) ... 38 0.002
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ... 38 0.002
At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q... 38 0.002
At2g14210.1 68415.m01583 MADS-box protein (ANR1) identical to AN... 38 0.002
At5g26630.1 68418.m03177 MADS-box protein (AGL35) homeotic prote... 38 0.003
At4g36590.1 68417.m05194 MADS-box protein (AGL40) contains Pfam ... 38 0.003
At1g77980.1 68414.m09087 MADS-box family protein MADS-box protei... 38 0.003
At1g22130.1 68414.m02766 MADS-box family protein similar to MADS... 38 0.003
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 38 0.003
At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / flor... 37 0.004
At3g02310.1 68416.m00213 developmental protein SEPALLATA2 / flor... 37 0.004
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila... 37 0.004
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila... 37 0.004
At5g48670.1 68418.m06023 MADS-box family protein contains simila... 37 0.006
At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box prote... 37 0.006
At5g65050.1 68418.m08182 MADS-box protein (MAF2) 36 0.007
At5g20240.1 68418.m02409 floral homeotic protein PISTILLATA (PI)... 36 0.007
At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box trans... 36 0.007
At1g77950.1 68414.m09084 MADS-box family protein similar to MADS... 36 0.007
At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to G... 36 0.007
At1g69540.1 68414.m07996 MADS-box family protein contains Pfam p... 36 0.007
At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF... 36 0.010
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 36 0.010
At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam p... 36 0.013
At5g65060.1 68418.m08183 MADS-box protein (MAF3) contains Pfam p... 36 0.013
At5g13790.1 68418.m01608 floral homeotic protein AGL-15 (AGL15) 36 0.013
At4g37940.1 68417.m05364 MADS-box family protein MADS-box protei... 36 0.013
At3g58780.1 68416.m06551 agamous-like MADS box protein AGL1 / sh... 36 0.013
At2g22630.1 68415.m02682 MADS-box protein (AGL17) nearly identic... 36 0.013
At1g77080.5 68414.m08973 MADS-box protein AGL27-II (AGL27) / MAD... 36 0.013
At1g77080.4 68414.m08976 MADS-box protein AGL27-II (AGL27) / MAD... 36 0.013
At1g77080.3 68414.m08974 MADS-box protein AGL27-II (AGL27) / MAD... 36 0.013
At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MAD... 36 0.013
At1g28460.1 68414.m03499 MADS-box family protein contains simila... 36 0.013
At1g65330.1 68414.m07408 MADS-box family protein similar to MADS... 35 0.017
At5g62165.2 68418.m07803 MADS-box protein (AGL42) 35 0.022
At5g62165.1 68418.m07802 MADS-box protein (AGL42) 35 0.022
At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG) co... 35 0.022
At2g42830.2 68415.m05303 agamous-like MADS box protein AGL5 / fl... 35 0.022
At2g42830.1 68415.m05302 agamous-like MADS box protein AGL5 / fl... 35 0.022
At5g65080.1 68418.m08186 MADS-box family protein 34 0.030
At4g24540.1 68417.m03517 MADS-box family protein 34 0.030
At4g09960.2 68417.m01630 MADS-box protein (AGL11) 34 0.030
At4g09960.1 68417.m01629 MADS-box protein (AGL11) 34 0.030
At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam ... 34 0.030
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 34 0.030
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 34 0.030
At3g66656.1 68416.m00780 MADS-box family protein contains Pfam p... 34 0.039
At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like p... 34 0.039
At3g05860.2 68416.m00659 MADS-box protein (AGL45) similar to MAD... 34 0.039
At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to MAD... 34 0.039
At1g65300.1 68414.m07405 MADS-box protein (AGL38) similar to MAD... 34 0.039
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS... 34 0.039
At2g22540.1 68415.m02673 short vegetative phase protein (SVP) id... 33 0.052
At4g22950.1 68417.m03313 MADS-box protein (AGL19) MADS-box prote... 33 0.091
At4g11880.1 68417.m01889 MADS-box protein (AGL14) nearly identic... 33 0.091
At2g45660.1 68415.m05677 MADS-box protein (AGL20) 33 0.091
At1g65360.1 68414.m07414 MADS-box protein (AGL23) similar to MAD... 33 0.091
At5g51870.2 68418.m06431 MADS-box protein (AGL71) contains Pfam ... 32 0.12
At5g51870.1 68418.m06430 MADS-box protein (AGL71) contains Pfam ... 32 0.12
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 32 0.12
At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains inter... 32 0.12
At3g54340.1 68416.m06005 floral homeotic protein APETALA3 (AP3) 32 0.12
At5g27960.1 68418.m03367 MADS-box protein (AGL90) 32 0.16
At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar to MAD... 32 0.16
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 31 0.21
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 31 0.21
At5g55690.1 68418.m06943 MADS-box protein (AGL47) 30 0.48
At2g40210.1 68415.m04945 MADS-box family protein contains Pfam p... 30 0.64
At1g22590.2 68414.m02821 MADS-box family protein similar to puta... 30 0.64
At1g28450.1 68414.m03497 MADS-box family protein similar to MADS... 29 0.84
At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin; g... 29 1.5
At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to gb|... 29 1.5
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 28 1.9
At1g56660.1 68414.m06516 expressed protein 28 1.9
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 28 2.6
At3g56710.1 68416.m06308 sigA-binding protein identical to SigA ... 28 2.6
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 28 2.6
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 28 2.6
At1g46408.1 68414.m05212 MADS-box family protein contains simila... 28 2.6
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 28 2.6
At1g23790.1 68414.m03001 expressed protein 28 2.6
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 27 3.4
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 27 3.4
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 27 3.4
At2g40070.1 68415.m04923 expressed protein 27 3.4
At1g60920.1 68414.m06857 MADS-box family protein contains SRF-t... 27 3.4
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 27 3.4
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 27 4.5
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 27 4.5
At2g40640.1 68415.m05012 expressed protein 27 4.5
At1g36370.1 68414.m04518 glycine hydroxymethyltransferase, putat... 27 4.5
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 27 4.5
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 27 4.5
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 27 5.9
At2g39480.1 68415.m04845 ABC transporter family protein related ... 27 5.9
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge... 27 5.9
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge... 27 5.9
At2g16630.1 68415.m01909 proline-rich family protein contains pr... 27 5.9
At1g29010.1 68414.m03548 expressed protein ; expression supporte... 27 5.9
At5g44680.1 68418.m05474 methyladenine glycosylase family protei... 26 7.9
At5g24165.1 68418.m02843 expressed protein 26 7.9
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 26 7.9
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 26 7.9
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 26 7.9
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 26 7.9
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 26 7.9
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 26 7.9
At1g17760.1 68414.m02198 suppressor of forked protein family pro... 26 7.9
>At3g04100.1 68416.m00434 MADS-box family protein contains Pfam
profile: PF00319 SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 207
Score = 46.4 bits (105), Expect = 7e-06
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 98 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
+ G+KTKG+ KI+M+ ++N R TFSKRKTGI KK
Sbjct: 7 AKGRKTKGKQKIEMKKVENYGDRMITFSKRKTGIFKK 43
>At1g17310.1 68414.m02110 MADS-box protein (AGL100) similar to
transcription factor GB:BAA25245 GI:2981610 from
[Ceratopteris richardii]; contains Pfam profile PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 217
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 91 QPKKSPPSNGKKT-KGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
QPKK + KT +GR KI+++ I+ + +R TFSKR+ G+ KK
Sbjct: 33 QPKKETTTQTPKTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKK 77
>At3g30260.1 68416.m03823 MADS-box protein (AGL79) similar to
GB:Q38876 from [Arabidopsis thaliana] (Plant Cell 7
(11), 1763-1771 (1995)); contains Pfam profile PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 249
Score = 41.5 bits (93), Expect = 2e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR ++++ I+NK+RR TFSKR+TG++KK
Sbjct: 2 GRGRVQLRRIENKIRRQVTFSKRRTGLVKK 31
>At3g61120.1 68416.m06840 MADS-box protein (AGL13)
Length = 244
Score = 40.3 bits (90), Expect = 5e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR K++++ I+NK+ R TFSKRK+G++KK
Sbjct: 2 GRGKVEVKRIENKITRQVTFSKRKSGLLKK 31
>At1g72350.1 68414.m08369 MADS-box protein (AGL60) contains Pfam
profile: PF00319 SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 224
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 91 QPKK-SPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
+PKK + K TKGR KI+++ I + RR TFSKR++G+ KK
Sbjct: 28 KPKKETKQKKPKTTKGRQKIEIKEIMLETRRQVTFSKRRSGLFKK 72
>At1g26310.1 68414.m03209 MADS-box protein, putative strong
similarity to DNA-binding protein [Brassica rapa subsp.
pekinensis] GI:6469345, SP|Q41276 Floral homeotic
protein APETALA1 (MADS C) {Sinapis alba}; contains
InterPro accession IPR002100: Transcription factor,
MADS-box
Length = 255
Score = 40.3 bits (90), Expect = 5e-04
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++++ I+NK+ R TFSKR+TG++KK
Sbjct: 2 GRGRVELKRIENKINRQVTFSKRRTGLLKK 31
>At2g45650.1 68415.m05676 MADS-box protein (AGL6)
Length = 252
Score = 39.5 bits (88), Expect = 8e-04
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++M+ I+NK+ R TFSKR+ G++KK
Sbjct: 2 GRGRVEMKRIENKINRQVTFSKRRNGLLKK 31
>At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 /
FRUITFULL (AGL8) NAP1-1, Nicotiana tabacum,
EMBL:AF009126; identical to SP:Q38876 Agamous-like MADS
box protein AGL8 (Floral homeotic protein AGL8)
(FRUITFULL){Arabidopsis thaliana} PMID:9502732,
PMID:10648231; identical to cDNA agamous-like 8 (AGL8)
GI:1004364
Length = 242
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++++ I+NK+ R TFSKR++G++KK
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRSGLLKK 31
>At2g24840.1 68415.m02971 MADS-box family protein
Length = 264
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 89 SLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
+L KK+ S K++ GR KI M I + R TFSKR+ G+ KK
Sbjct: 47 TLHTKKTMMSKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKK 92
>At5g23260.2 68418.m02722 MADS-box protein, putative
Length = 252
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI+++ I+N+ R TFSKR+TG++KK +
Sbjct: 2 GRGKIEIKKIENQTARQVTFSKRRTGLIKKTR 33
>At5g23260.1 68418.m02721 MADS-box protein, putative
Length = 247
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI+++ I+N+ R TFSKR+TG++KK +
Sbjct: 2 GRGKIEIKKIENQTARQVTFSKRRTGLIKKTR 33
>At2g03710.3 68415.m00329 MADS-box protein (AGL3)
Length = 187
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR K++++ I+NK+ R TF+KR+ G++KK
Sbjct: 2 GRGKVELKRIENKINRQVTFAKRRNGLLKK 31
>At2g03710.2 68415.m00331 MADS-box protein (AGL3)
Length = 257
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR K++++ I+NK+ R TF+KR+ G++KK
Sbjct: 2 GRGKVELKRIENKINRQVTFAKRRNGLLKK 31
>At2g03710.1 68415.m00330 MADS-box protein (AGL3)
Length = 258
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR K++++ I+NK+ R TF+KR+ G++KK
Sbjct: 2 GRGKVELKRIENKINRQVTFAKRRNGLLKK 31
>At2g03060.1 68415.m00259 MADS-box family protein
Length = 337
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GRVK+K++ ++N R +TF+KRK GI+KK
Sbjct: 2 GRVKLKIKKLENTNGRQSTFAKRKNGILKK 31
>At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) /
agamous-like MADS box protein (AGL7) identical to
SP|P35631 Floral homeotic protein APETALA1 (AGL7
protein) {Arabidopsis thaliana}
Length = 256
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++++ I+NK+ R TFSKR+ G++KK
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLLKK 31
>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 299
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 101 KKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
KK+KGR KI+M + N+ TFSKR++G+ KK
Sbjct: 3 KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKK 36
>At2g34440.1 68415.m04225 MADS-box family protein similar to
SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon};
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 172
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KIKME + + R TFSKR+TG+ KK
Sbjct: 2 GRRKIKMEMVQDMNTRQVTFSKRRTGLFKK 31
>At2g14210.1 68415.m01583 MADS-box protein (ANR1) identical to ANR1,
MADS-box protein [Arabidopsis thaliana] GI:2959320
Length = 234
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI + IDN R TFSKR++G++KK K
Sbjct: 2 GRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAK 33
>At5g26630.1 68418.m03177 MADS-box protein (AGL35) homeotic protein
boi1AP3, Brassica oleracea, EMBL:U67453; contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 218
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K+KM +I+N+ R +TF KRK G++KK
Sbjct: 3 RQKVKMTFIENETARKSTFKKRKKGLLKK 31
>At4g36590.1 68417.m05194 MADS-box protein (AGL40) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 248
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 101 KKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
+ TKGR KI+M+ ++N+ TFSKR+ G+ KK
Sbjct: 3 RSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKK 36
>At1g77980.1 68414.m09087 MADS-box family protein MADS-box protein
AGL66
Length = 332
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GRVK++++ I+N R TFSKR+ G++KK
Sbjct: 2 GRVKLEIKRIENTTNRQVTFSKRRNGLIKK 31
>At1g22130.1 68414.m02766 MADS-box family protein similar to
MADS-box protein (ZAP1) GI:939784 from [Zea mays]
Length = 335
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GRVK++++ I+N R TFSKR+ G++KK
Sbjct: 2 GRVKLEIKRIENTTNRQVTFSKRRNGLIKK 31
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GRVK+K++ +++ R T++KRK GI+KK K
Sbjct: 2 GRVKLKIKRLESTSNRQVTYTKRKNGILKKAK 33
>At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / floral
homeotic protein (AGL2) (SEP1) identical to
developmental protein SEPALLATA1 / floral homeotic
protein (AGL2 / SEP1) SP:P29382 from [Arabidopsis
thaliana]
Length = 251
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++++ I+NK+ R TF+KR+ G++KK
Sbjct: 2 GRGRVELKRIENKINRQVTFAKRRNGLLKK 31
>At3g02310.1 68416.m00213 developmental protein SEPALLATA2 / floral
homeotic protein (AGL4) (SEP2) identical to
developmental protein SEPALLATA2 / floral homeotic
protein AGL4 GB:P29384 [Arabidopsis thaliana], Pfam HMM
hit: SRF-type transcription factors (DNA-binding and
dimerization domain)
Length = 250
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++++ I+NK+ R TF+KR+ G++KK
Sbjct: 2 GRGRVELKRIENKINRQVTFAKRRNGLLKK 31
>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 251
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++++ I+NK+ R TF+KR+ G++KK
Sbjct: 2 GRGRVELKRIENKINRQVTFAKRRNGLLKK 31
>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 250
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +++++ I+NK+ R TF+KR+ G++KK
Sbjct: 2 GRGRVELKRIENKINRQVTFAKRRNGLLKK 31
>At5g48670.1 68418.m06023 MADS-box family protein contains
similarity to MADS-box DNA-binding protein
Length = 321
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K+K+ YI N R TF KRK G+MKK
Sbjct: 3 RKKVKLAYISNDSSRKATFKKRKKGLMKK 31
>At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box protein
EGM1, Eucalyptus grandis, EMBL:AF029975; contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 345
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
G K+K+ I N++ R T+F KRK GIMKK
Sbjct: 2 GMKKVKLSLIANEISRETSFMKRKNGIMKK 31
>At5g65050.1 68418.m08182 MADS-box protein (MAF2)
Length = 182
Score = 36.3 bits (80), Expect = 0.007
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR K++++ I+NK R TFSKR+ G+++K ++
Sbjct: 2 GRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQ 34
>At5g20240.1 68418.m02409 floral homeotic protein PISTILLATA (PI)
contains Pfam profiles PF01486: K-box region and
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 208
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI+++ I+N R TFSKR+ G++KK K
Sbjct: 2 GRGKIEIKRIENANNRVVTFSKRRNGLVKKAK 33
>At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box
transcription factor DEFH125 - Antirrhinum majus,
PIR:T17029; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 240
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI ++ I+N R TFSKR+ G++KK K
Sbjct: 2 GRGKIAIKRINNSTSRQVTFSKRRNGLLKKAK 33
>At1g77950.1 68414.m09084 MADS-box family protein similar to MADS
box transcription factor GI:1905943 from [Sorghum
bicolor]
Length = 124
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GRVK++++ I+ R TFSKRK G++KK
Sbjct: 2 GRVKLELKRIEKSTNRQITFSKRKKGLIKK 31
>At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to
GB:AAC49085 GI:862650 from (Arabidopsis thaliana) (Plant
Cell 7 (8), 1259-1269 (1995))
Length = 211
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
R KI+++ I+N + R TF KR+TG++KK K
Sbjct: 3 RGKIQLKRIENPVHRQVTFCKRRTGLLKKAK 33
>At1g69540.1 68414.m07996 MADS-box family protein contains Pfam
profile: PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 378
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GRVK+K++ + N R T++KR+ GIMKK K
Sbjct: 2 GRVKLKIKKLQNMNGRQCTYTKRRHGIMKKAK 33
>At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF)
identical to FLOWERING LOCUS C protein (MADS box protein
FLOWERING LOCUS F) (Swiss-Prot:Q9S7Q7) [Arabidopsis
thaliana]
Length = 196
Score = 35.9 bits (79), Expect = 0.010
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR K++++ I+NK R TFSKR+ G+++K ++
Sbjct: 2 GRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQ 34
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 35.9 bits (79), Expect = 0.010
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI++++I++ + R TFS+R+ GI KK
Sbjct: 2 GRRKIEIKFIEDSIERKATFSRRRNGIFKK 31
>At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); contains Pfam
profile PF01486: K-box region
Length = 200
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR K++++ I+NK R TF KR+ G+M+K ++
Sbjct: 2 GRRKVEIKRIENKSSRQVTFCKRRNGLMEKARQ 34
>At5g65060.1 68418.m08183 MADS-box protein (MAF3) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); contains Pfam
profile PF01486: K-box region
Length = 196
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR K++++ I+NK R TFSKR+ G+++K ++
Sbjct: 2 GRRKVEIKRIENKSSRQVTFSKRRKGLIEKARQ 34
>At5g13790.1 68418.m01608 floral homeotic protein AGL-15 (AGL15)
Length = 268
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI+++ I+N R TFSKR++G++KK +
Sbjct: 2 GRGKIEIKRIENANSRQVTFSKRRSGLLKKAR 33
>At4g37940.1 68417.m05364 MADS-box family protein MADS-box protein
AGL17 - Arabidopsis thaliana, PID:g862648; identical to
cDNA MADS-box protein AGL21 GI:18478602
Length = 228
Score = 35.5 bits (78), Expect = 0.013
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI ++ ID+ R TFSKR+ G++KK K
Sbjct: 2 GRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAK 33
>At3g58780.1 68416.m06551 agamous-like MADS box protein AGL1 /
shatterproof 1 (AGL1) (SHP1) identical to SP|P29381
Agamous-like MADS box protein AGL1 (Protein Shatterproof
1) {Arabidopsis thaliana}
Length = 248
Score = 35.5 bits (78), Expect = 0.013
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 95 SPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
S + K GR KI+++ I+N R TF KR+ G++KK
Sbjct: 7 SHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKK 46
>At2g22630.1 68415.m02682 MADS-box protein (AGL17) nearly identical
to MADS-box protein AGL17 [Arabidopsis thaliana]
GI:862648
Length = 227
Score = 35.5 bits (78), Expect = 0.013
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR KI ++ ID+ R TFSKR+ G++KK K
Sbjct: 2 GRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAK 33
>At1g77080.5 68414.m08973 MADS-box protein AGL27-II (AGL27) / MADS
affecting flowering 1 (MAF1) contains similarity to MADS
box transcription factor GI:3688591 from [Triticum
aestivum]; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 176
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR KI+++ I+NK R TFSKR+ G++ K ++
Sbjct: 2 GRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQ 34
>At1g77080.4 68414.m08976 MADS-box protein AGL27-II (AGL27) / MADS
affecting flowering 1 (MAF1) contains similarity to MADS
box transcription factor GI:3688591 from [Triticum
aestivum]; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 196
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR KI+++ I+NK R TFSKR+ G++ K ++
Sbjct: 2 GRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQ 34
>At1g77080.3 68414.m08974 MADS-box protein AGL27-II (AGL27) / MADS
affecting flowering 1 (MAF1) contains similarity to MADS
box transcription factor GI:3688591 from [Triticum
aestivum]; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 173
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR KI+++ I+NK R TFSKR+ G++ K ++
Sbjct: 2 GRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQ 34
>At1g77080.2 68414.m08975 MADS-box protein AGL27-II (AGL27) / MADS
affecting flowering 1 (MAF1) contains similarity to MADS
box transcription factor GI:3688591 from [Triticum
aestivum]; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 192
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR KI+++ I+NK R TFSKR+ G++ K ++
Sbjct: 2 GRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQ 34
>At1g28460.1 68414.m03499 MADS-box family protein contains
similarity to MADS-box transcription factor GI:6580947
from [Picea abies]
Length = 182
Score = 35.5 bits (78), Expect = 0.013
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 99 NGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
N KKTKG+ KI ++ I+ R TFSKR GI K
Sbjct: 2 NPKKTKGKQKINIKKIEKDEGRSVTFSKRLNGIYTK 37
>At1g65330.1 68414.m07408 MADS-box family protein similar to
MADS-box transcription factor GI:6580941 from [Picea
abies]
Length = 279
Score = 35.1 bits (77), Expect = 0.017
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K+K+ +I+N R TTF+KRK G++KK
Sbjct: 2 RGKMKLSFIENDSVRKTTFTKRKKGMLKK 30
>At5g62165.2 68418.m07803 MADS-box protein (AGL42)
Length = 210
Score = 34.7 bits (76), Expect = 0.022
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI+M+ I+N R TFSKR+ G++KK
Sbjct: 3 RGKIEMKKIENATSRQVTFSKRRNGLLKK 31
>At5g62165.1 68418.m07802 MADS-box protein (AGL42)
Length = 210
Score = 34.7 bits (76), Expect = 0.022
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI+M+ I+N R TFSKR+ G++KK
Sbjct: 3 RGKIEMKKIENATSRQVTFSKRRNGLLKK 31
>At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG)
contains an ACG start codon (Riechmann, Ito, and
Meyerowitz, Mol Cell Biol, 1999); supported by cDNA
gi|16155|emb|X53579
Length = 252
Score = 34.7 bits (76), Expect = 0.022
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 98 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
S+ + GR KI+++ I+N R TF KR+ G++KK
Sbjct: 11 SSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKK 47
>At2g42830.2 68415.m05303 agamous-like MADS box protein AGL5 /
floral homeodomain transcription factor (AGL5) identical
to SP|P29385 Agamous-like MADS box protein AGL5
{Arabidopsis thaliana}
Length = 248
Score = 34.7 bits (76), Expect = 0.022
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 98 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
+ K GR KI+++ I+N R TF KR+ G++KK
Sbjct: 10 AESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKK 46
>At2g42830.1 68415.m05302 agamous-like MADS box protein AGL5 /
floral homeodomain transcription factor (AGL5) identical
to SP|P29385 Agamous-like MADS box protein AGL5
{Arabidopsis thaliana}
Length = 246
Score = 34.7 bits (76), Expect = 0.022
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 98 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
+ K GR KI+++ I+N R TF KR+ G++KK
Sbjct: 10 AESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKK 46
>At5g65080.1 68418.m08186 MADS-box family protein
Length = 205
Score = 34.3 bits (75), Expect = 0.030
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
GR +++++ I+NK R TF KR+ G+M+K ++
Sbjct: 9 GRRRVEIKRIENKSSRQVTFCKRRNGLMEKARQ 41
>At4g24540.1 68417.m03517 MADS-box family protein
Length = 220
Score = 34.3 bits (75), Expect = 0.030
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI+++ IDN R TFSKR+ GI KK
Sbjct: 3 REKIRIKKIDNITARQVTFSKRRRGIFKK 31
>At4g09960.2 68417.m01630 MADS-box protein (AGL11)
Length = 216
Score = 34.3 bits (75), Expect = 0.030
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI+++ I+N R TF KR+ G++KK
Sbjct: 2 GRGKIEIKRIENSTNRQVTFCKRRNGLLKK 31
>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
Length = 230
Score = 34.3 bits (75), Expect = 0.030
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KI+++ I+N R TF KR+ G++KK
Sbjct: 2 GRGKIEIKRIENSTNRQVTFCKRRNGLLKK 31
>At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 109
Score = 34.3 bits (75), Expect = 0.030
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 101 KKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
K+ GR K+K++ I++ R + FSKRK G+ KK
Sbjct: 14 KENMGRKKLKLKRIESLKERSSKFSKRKKGLFKK 47
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 34.3 bits (75), Expect = 0.030
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAG-VKRPSDQ 62
P GAR P LLG +P + G PP LG GP +P P P P AG + PS
Sbjct: 207 PNGARAP--SPVNNPLLGGIPK--AGGFPP--LGAHGPFQPTASPVPTPLAGWMSSPSSV 260
Query: 63 CYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSN 99
+ + ++ L +P A+L+ ++PP+N
Sbjct: 261 PHPAVSAGAIALGGPSIP-------AALKHPRTPPTN 290
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 34.3 bits (75), Expect = 0.030
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAG-VKRPSDQ 62
P GAR P LLG +P + G PP LG GP +P P P P AG + PS
Sbjct: 207 PNGARAP--SPVNNPLLGGIPK--AGGFPP--LGAHGPFQPTASPVPTPLAGWMSSPSSV 260
Query: 63 CYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSN 99
+ + ++ L +P A+L+ ++PP+N
Sbjct: 261 PHPAVSAGAIALGGPSIP-------AALKHPRTPPTN 290
>At3g66656.1 68416.m00780 MADS-box family protein contains Pfam
profile: PF00319 SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 178
Score = 33.9 bits (74), Expect = 0.039
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR KIKME + + + TFSKR+ G+ KK
Sbjct: 2 GRRKIKMEKVQDTNTKQVTFSKRRLGLFKK 31
>At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like
protein 15 - Arabidopsis thaliana, PIR:S71200
Length = 256
Score = 33.9 bits (74), Expect = 0.039
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
GR +I+++ I+N R TFSKR+ G++KK K
Sbjct: 2 GRGRIEIKKIENINSRQVTFSKRRNGLIKKAK 33
>At3g05860.2 68416.m00659 MADS-box protein (AGL45) similar to
MADS-box protein; PMID: 12837945; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 207
Score = 33.9 bits (74), Expect = 0.039
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K+ + YI N+ R TF+KRK G++KK
Sbjct: 3 RKKLNLSYITNESMRKATFNKRKKGLVKK 31
>At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to
MADS-box protein; PMID: 12837945; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 260
Score = 33.9 bits (74), Expect = 0.039
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K+ + YI N+ R TF+KRK G++KK
Sbjct: 3 RKKLNLSYITNESMRKATFNKRKKGLVKK 31
>At1g65300.1 68414.m07405 MADS-box protein (AGL38) similar to
MADS-box transcription factor GI:6580947 from [Picea
abies]; contains Pfam profile PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain)
Length = 278
Score = 33.9 bits (74), Expect = 0.039
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 108 KIKMEYIDNKLRRYTTFSKRKTGIMKK 134
K+K+ I+N + R TTF+KRK G+ KK
Sbjct: 4 KMKLSLIENSVSRKTTFTKRKKGMTKK 30
>At1g31630.1 68414.m03884 MADS-box family protein similar to
MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
Length = 339
Score = 33.9 bits (74), Expect = 0.039
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KIK+ I NK R TTF KRK GI K
Sbjct: 2 RSKIKLSLIANKTSRRTTFRKRKGGITNK 30
>At2g22540.1 68415.m02673 short vegetative phase protein (SVP)
identical to cDNA short vegetative phase protein (SVP)
GI:10944319;
Length = 240
Score = 33.5 bits (73), Expect = 0.052
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI++ IDN R TFSKR+ G+ KK
Sbjct: 3 REKIQIRKIDNATARQVTFSKRRRGLFKK 31
>At4g22950.1 68417.m03313 MADS-box protein (AGL19) MADS-box protein
AGL14, Arabidopsis thaliana, gb:U20184
Length = 219
Score = 32.7 bits (71), Expect = 0.091
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K +M+ I+N R TFSKR+ G++KK
Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKK 31
>At4g11880.1 68417.m01889 MADS-box protein (AGL14) nearly identical
to MADS-box protein AGL14 GI:862644
Length = 221
Score = 32.7 bits (71), Expect = 0.091
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K +M+ I+N R TFSKR+ G++KK
Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKK 31
>At2g45660.1 68415.m05677 MADS-box protein (AGL20)
Length = 214
Score = 32.7 bits (71), Expect = 0.091
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R K +M+ I+N R TFSKR+ G++KK
Sbjct: 3 RGKTQMKRIENATSRQVTFSKRRNGLLKK 31
>At1g65360.1 68414.m07414 MADS-box protein (AGL23) similar to
MADS-box protein GI:2505875 from [Arabidopsis thaliana];
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 226
Score = 32.7 bits (71), Expect = 0.091
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 101 KKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
KKT GR K+++ + + TFSKRK G+ KK
Sbjct: 3 KKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKK 36
>At5g51870.2 68418.m06431 MADS-box protein (AGL71) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 172
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI+++ I+N R TFSKR++G+ KK
Sbjct: 3 RGKIEIKKIENVTSRQVTFSKRRSGLFKK 31
>At5g51870.1 68418.m06430 MADS-box protein (AGL71) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 207
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI+++ I+N R TFSKR++G+ KK
Sbjct: 3 RGKIEIKKIENVTSRQVTFSKRRSGLFKK 31
>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain);
Length = 211
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI+++ I+N R TFSKR++G+ KK
Sbjct: 3 RGKIEIKKIENVTSRQVTFSKRRSGLFKK 31
>At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains interpro
domain: IPR002100 transcriptor factor, MADS box;
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 327
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
G K+K+ I N+ R T+F KRK GI KK
Sbjct: 2 GMKKVKLSLIANERSRKTSFIKRKDGIFKK 31
>At3g54340.1 68416.m06005 floral homeotic protein APETALA3 (AP3)
Length = 232
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
R KI+++ I+N+ R T+SKR+ G+ KK
Sbjct: 3 RGKIQIKRIENQTNRQVTYSKRRNGLFKK 31
>At5g27960.1 68418.m03367 MADS-box protein (AGL90)
Length = 320
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 108 KIKMEYIDNKLRRYTTFSKRKTGIMKK 134
K+K+ I N+ R T+F KRK GI KK
Sbjct: 3 KVKLSLIANERSRKTSFMKRKNGIFKK 29
>At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar to
MADS-box transcription factor GI:6580943 from [Picea
abies]; contains Pfam profile PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain)
Length = 247
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 101 KKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
+K GR KI++ + N+ TFSKR++G+ KK
Sbjct: 3 RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKK 36
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.5 bits (68), Expect = 0.21
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 19 LLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAG-VKRPSDQCYDDRPSQSVPLDHC 77
LLG +P + G PP LG GP +P P P P AG + PS + + L
Sbjct: 220 LLGSLPK--AEGFPP--LGAHGPFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALG-- 273
Query: 78 PMPDIADDGYASLQPKKSPPSN 99
P I A+L+ ++PPSN
Sbjct: 274 -APSI----QAALKHPRTPPSN 290
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.5 bits (68), Expect = 0.21
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 19 LLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAG-VKRPSDQCYDDRPSQSVPLDHC 77
LLG +P + G PP LG GP +P P P P AG + PS + + L
Sbjct: 220 LLGSLPK--AEGFPP--LGAHGPFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALG-- 273
Query: 78 PMPDIADDGYASLQPKKSPPSN 99
P I A+L+ ++PPSN
Sbjct: 274 -APSI----QAALKHPRTPPSN 290
>At5g55690.1 68418.m06943 MADS-box protein (AGL47)
Length = 277
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR +KM I N+ R TT+ KRK + KK
Sbjct: 2 GRKMVKMTRITNEKTRITTYKKRKACLYKK 31
>At2g40210.1 68415.m04945 MADS-box family protein contains Pfam
profile: PF00319 SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 371
Score = 29.9 bits (64), Expect = 0.64
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 106 RVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
R K+K+ +I+N R T+ K + G++KK K
Sbjct: 3 RKKVKLVWIENDKSRATSLQKMRVGLLKKVK 33
>At1g22590.2 68414.m02821 MADS-box family protein similar to
putative DNA-binding protein GI:6714399 from
[Arabidopsis thaliana]; MADS-box protein AGL87
Length = 163
Score = 29.9 bits (64), Expect = 0.64
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 105 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
GR K+ + I + R TF KRK G++KK
Sbjct: 2 GRRKVTHQLISDNATRRVTFRKRKDGLLKK 31
>At1g28450.1 68414.m03497 MADS-box family protein similar to
MADS-box protein GI:2160701 from [Pinus radiata]
Length = 185
Score = 29.5 bits (63), Expect = 0.84
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 99 NGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGI 131
N KKTKG+ KI ++ I+ R T SKR I
Sbjct: 2 NPKKTKGKQKINIKKIEKDEDRSVTLSKRLNAI 34
>At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin;
glycine-rich protein 16 (GRP16) PMID:11431566
Length = 244
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQP 48
PGGA G + G G+ P+ +P A GG +PG +P
Sbjct: 188 PGGASGGGPGGASGGASGDKPEGAPGDKPGGAWGGKPGKKPGHKP 232
>At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to
gb|Y15008 M79 protein (MADS box) from oryza sativa and
contains SRF transcription factor domain PF|00319
Length = 213
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 104 KGRVKIKMEYIDNKLRRYTTFSKRKTGIMKK 134
KG+ IK I+ K++R TF+KRK ++KK
Sbjct: 3 KGKRVIKK--IEEKIKRQVTFAKRKKSLIKK 31
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 26 MYSAGRPPSALGGAG-PLRPGMQPCP-MPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIA 83
M +A S L G PLRPG PC + G+ + C D S L + P P
Sbjct: 318 MEAASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSL 377
Query: 84 DD 85
D
Sbjct: 378 TD 379
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 90 LQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQK 136
++ KK S+GK K + K K + +D++++ K+K G M +K
Sbjct: 45 VKAKKDEESSGKSKKDKEKKKGKNVDSEVKEDKDDDKKKDGKMVSKK 91
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/75 (24%), Positives = 28/75 (37%)
Query: 44 PGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKT 103
P QP P P + P+ Y PSQ+ PL P + ++ + G +
Sbjct: 133 PQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGGGIRK 192
Query: 104 KGRVKIKMEYIDNKL 118
+ R K E + L
Sbjct: 193 RHRTKFTAEQKERML 207
>At3g56710.1 68416.m06308 sigA-binding protein identical to SigA
binding protein [Arabidopsis thaliana]
gi|6980074|gb|AAF34713; contains Pfam PF05678: VQ motif
Length = 151
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 93 KKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSK 126
+KSP K T IK+ YI N +R T SK
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASK 57
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQS-VPLDHCPMPDI 82
G+P G RP +P P+ +K D DD+P + V DH P +
Sbjct: 363 GKPDDKPKGKPKGRPKGKPDDKPKGKLKGKQDDKPDDKPDEKPVNTDHMKYPSL 416
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 70 QSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRVK 108
++ PL P P DD LQ K+ S G +GRV+
Sbjct: 621 ENYPLPEQPEPLSEDDSVKELQRKRHSASPGVSIRGRVR 659
>At1g46408.1 68414.m05212 MADS-box family protein contains
similarity to MADS-box protein GI:2505875 from
[Arabidopsis thaliana]
Length = 266
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 108 KIKMEYIDNKLRRYTTFSKRKTGIMKK 134
KI +E I NK R +FSKR+ G+ K
Sbjct: 7 KIAIEKIQNKNPRAVSFSKRRKGLYSK 33
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 27.9 bits (59), Expect = 2.6
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 21 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHC-PM 79
G +P Y PP + GA P RP P P R P Q RP Q P + +
Sbjct: 118 GVVPRPYGMVYPPQQVPGAVPARPMYYPGPPMRH--PAPVWQMPPPRPQQWYPQNPALSV 175
Query: 80 PDIADDGY 87
P A GY
Sbjct: 176 PPAAHLGY 183
>At1g23790.1 68414.m03001 expressed protein
Length = 518
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 88 ASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKQKR 137
AS++ SP + KK++ I E N + + T SKR+ + ++QKR
Sbjct: 367 ASIEAAASPATTEKKSEDGSLILHEIQHNSIDQEKTTSKRRILLKQQQKR 416
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQP 48
PGG P + G+ G P G PP A GG P RPGM P
Sbjct: 212 PGGMMRGPPPPPH-GMQGPPPPR--PGMPP-APGGFAPPRPGMPP 252
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 32 PPSALGGAGPLRPGMQPCP 50
PP + G P RPGM P P
Sbjct: 222 PPHGMQGPPPPRPGMPPAP 240
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQP 48
PGG P + G+ G P G PP A GG P RPGM P
Sbjct: 212 PGGMMRGPPPPPH-GMQGPPPPR--PGMPP-APGGFAPPRPGMPP 252
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 32 PPSALGGAGPLRPGMQPCP 50
PP + G P RPGM P P
Sbjct: 222 PPHGMQGPPPPRPGMPPAP 240
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 55 GVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKK 102
G+KR + PSQS D C ++ A+ + K P NGKK
Sbjct: 241 GIKRSRKKLSLALPSQSQKKDLCGEEELTRGVSAACKENKKPNLNGKK 288
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.5 bits (58), Expect = 3.4
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 2 DAPGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSD 61
D PG + E+ P+ L E P + GRP + +G + PG P PR
Sbjct: 375 DMPGFSLETP--PNLRTTLPERPLSATRGRPGAPSSRSGSVEPGGPPGGRPR------RQ 426
Query: 62 QCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKGRV 107
C R + +P + + GY+ SP G K RV
Sbjct: 427 SCSPSRGRAPMYSSGSSVPAV-NRGYSKASDNVSPVMMGTKMVERV 471
>At1g60920.1 68414.m06857 MADS-box family protein contains SRF-type
transcription factor (DNA-binding and dimerisation
domain)
Length = 191
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 108 KIKMEYIDNKLRRYTTFSKRKTGIMKK 134
KI+M+ I++K R F+KRK+G+ K
Sbjct: 7 KIEMKRIEDKNVRAVAFTKRKSGLFHK 33
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
strong similarity to dynamin-like protein 6 (ADL6)
[Arabidopsis thaliana] GI:6651399; contains Pfam
profiles PF01031: Dynamin central region, PF00350:
Dynamin family, PF02212: Dynamin GTPase effector domain,
PF00169: PH domain; identical to cDNA dynamin-like
protein ADL3, GI:4803835
Length = 920
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 71 SVPLDHCPMPDIADDGYASLQPKKSPPSNGKKTKG 105
+V L+ C + +I+DD + K SNG +KG
Sbjct: 624 TVTLEECSIEEISDDEGEKSKSSKDKKSNGPDSKG 658
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAG 55
PGG MG G M M G P +GG G P +Q PM G
Sbjct: 335 PGGPMGQGGPMGMMGPGGPM-SMMGPGGPMGPMGGQGGSYPAVQGLPMSGGG 385
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 4 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAG 55
PGG MG G M M G P +GG G P +Q PM G
Sbjct: 434 PGGPMGQGGPMGMMGPGGPM-SMMGPGGPMGPMGGQGGSYPAVQGLPMSGGG 484
>At2g40640.1 68415.m05012 expressed protein
Length = 383
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 69 SQSVPLDHCPMPDIADDGYASLQPKKSPPS 98
S+S+ L HC + I+D+ + + PPS
Sbjct: 352 SESIKLQHCSLAKISDNSSTKVTVAEMPPS 381
>At1g36370.1 68414.m04518 glycine hydroxymethyltransferase,
putative / serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 598
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 38 GAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMP 80
G G M P P PRA + S D+ +S+P P+P
Sbjct: 13 GFGCSHASMTPTPTPRAPIADDSINLQVDQSFRSLPTTFSPIP 55
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 28 SAGRPPSALGG--AGPLRPGMQPCPMPRAGVKRPSDQCYDD 66
S R P G AGP R G P P P G PS + +
Sbjct: 56 SGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKAVQE 96
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 28 SAGRPPSALGG--AGPLRPGMQPCPMPRAGVKRPSDQCYDD 66
S R P G AGP R G P P P G PS + +
Sbjct: 56 SGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKAVQE 96
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 42 LRPGMQPCPMPRA-GVKRPSDQCYDDR-PSQSVPLDHCPMPDIADDGYASLQPKKSPPSN 99
L P + P P+ K PS P+ SVP P P + + P ++P S+
Sbjct: 32 LSPKPRTVPSPKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPSPNPTPVTPPRTPGSS 91
Query: 100 G 100
G
Sbjct: 92 G 92
>At2g39480.1 68415.m04845 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1407
Score = 26.6 bits (56), Expect = 5.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 27 YSAGRPPSA-LGGAGPLRPGMQPCPMPRAG--VKRPSDQCYDDRPSQSVPLDHCPMPDIA 83
+ A R SA G P P M P + G V R + C++ S+ P DH P P+
Sbjct: 668 FQAERDSSAGRGFQEPSSPKMAKSPSLQRGHNVFRSQELCFN---SEESPNDHSPAPEKL 724
Query: 84 DDGYASLQPKKSPPS 98
+ +SL + P+
Sbjct: 725 GENGSSLDVGEKEPT 739
>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2 from
Homo sapiens [SP|O15488]
Length = 389
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 80 PDIADDGY-----ASL--QPKKSPPSNGKKTKGRVKIKMEY 113
PD AD G+ + L QP SPPSNG G +++ + Y
Sbjct: 113 PDGADQGFLVSYFSDLLDQPLFSPPSNGSVLNGHLRLPLGY 153
>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2 from
Homo sapiens [SP|O15488]
Length = 497
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 80 PDIADDGY-----ASL--QPKKSPPSNGKKTKGRVKIKMEY 113
PD AD G+ + L QP SPPSNG G +++ + Y
Sbjct: 221 PDGADQGFLVSYFSDLLDQPLFSPPSNGSVLNGHLRLPLGY 261
>At2g16630.1 68415.m01909 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 359
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 39 AGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSP 96
A P++P CP P P Q P Q H +P I+ D A+L P K P
Sbjct: 139 AQPVQPSSF-CPKPPTAPVMPPPQVPVMPPPQVPVKPHPKVPVISPDPPATLPPPKVP 195
>At1g29010.1 68414.m03548 expressed protein ; expression supported
by MPSS
Length = 220
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 84 DDGYASLQPKKSPPSNGKKTK 104
DD Y+SL PKK +NG K +
Sbjct: 16 DDNYSSLCPKKQKHNNGGKKR 36
>At5g44680.1 68418.m05474 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 353
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 56 VKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYASLQP----KKSPPSNGKKTKGRVKIKM 111
+++P+ C + S S P+ +D GY + P +K P S + V +K
Sbjct: 74 LRKPAGSCKELLRSSSTKSKPVISPENSDGGYKEVMPMVIVQKQPGSIAAARREEVAMKQ 133
Query: 112 EYIDNKLRRY 121
E K+ Y
Sbjct: 134 EERKKKISHY 143
>At5g24165.1 68418.m02843 expressed protein
Length = 75
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 83 ADDGYASLQPKKSPPSN 99
AD G ASLQPK++P S+
Sbjct: 47 ADGGKASLQPKRTPVSD 63
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 26.2 bits (55), Expect = 7.9
Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 22 EMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPD 81
+ P A PS G+ PL P P P+ P P DHC P
Sbjct: 1108 DSPATTCATELPSFPAGSPPLPHESPPSPPPQPPSSPPPPSSPPQLAPAPPPSDHCLPPP 1167
Query: 82 IADDGYASLQPKKSPPSN 99
A A Q PPS+
Sbjct: 1168 TAP--LAPAQSIALPPSS 1183
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 32 PPSALGGAGPLRPGMQPCPMPRAGVKRP 59
PP A G+ PL + P P AG K P
Sbjct: 462 PPGAFPGSIPLNASVPPPTQPPAGEKPP 489
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 32 PPSALGGAGPLRPGMQPCPMPRAGVKRP 59
PP A G+ PL + P P AG K P
Sbjct: 462 PPGAFPGSIPLNASVPPPTQPPAGEKPP 489
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 32 PPSALGGAGPLRPGMQPCPMPRAGVKRP 59
PP A G+ PL + P P AG K P
Sbjct: 462 PPGAFPGSIPLNASVPPPTQPPAGEKPP 489
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 66 DRPSQSVPL---DHCPMPDIADDGYASLQPKKSPP 97
D P+ S P D P PD + DG A+ P S P
Sbjct: 3 DSPTSSPPAPSADSAPPPDTSSDGSAAPPPTDSAP 37
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 26.2 bits (55), Expect = 7.9
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 41 PLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADDGYAS-LQPKKSPP 97
P P +P P P + PS + Y P S P P P I Y+S P SPP
Sbjct: 504 PPPPEYEPSPPPPSSEMSPSVRAYPPPPPLSPPPPSPPPPYI----YSSPPPPSPSPP 557
>At1g17760.1 68414.m02198 suppressor of forked protein family
protein / SUF family protein Contains Pfam PF05843:
Suppressor of forked protein (Suf); identical to
cleavage stimulation factor 77 (GI:21591637)
[Arabidopsis thaliana]; similar to suppressor of forked
protein; Su(f) protein [Drosophila virilis] GI:4092534
Length = 734
Score = 26.2 bits (55), Expect = 7.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 30 GRPPSALGGAGPLRPGMQPCPMPRAGVKR-PSDQCYDDRPS--QSVPL 74
G PPS +GP R Q P R KR SD+ +D + QS PL
Sbjct: 645 GNPPSQNDPSGPTRGVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPL 692
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,893,969
Number of Sequences: 28952
Number of extensions: 188109
Number of successful extensions: 455
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 132
length of query: 137
length of database: 12,070,560
effective HSP length: 74
effective length of query: 63
effective length of database: 9,928,112
effective search space: 625471056
effective search space used: 625471056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -