Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001381-TA|BGIBMGA001381-PA|undefined
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 33 0.073
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 29 0.90
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 1.2
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 6.4
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 8.4
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 26 8.4
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 8.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.4
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 33.1 bits (72), Expect = 0.073
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 310 SSEIYKERMMNFLNRCASLEGVSNP---EATPSVHSDALNTIPEVASAEINLENER-KAT 365
SS+ +K+ N SL GV P E+ PS D ++ E A +++ +NE +
Sbjct: 53 SSKFWKQFFEASAN--VSLSGVEEPVPVESNPS-DQDVMSNSTE-ADLQLHTKNEHLEKR 108
Query: 366 TSPLSWGDTPDHTVYNQNTLNLENIFNFTKKVDAKNEEPSEND 408
S + D PD V NT N + + + KK+D E+ S +D
Sbjct: 109 HSFVGKSDFPDAAVQGDNTKNEDFVQSTPKKMDVSLEDISLDD 151
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 29.5 bits (63), Expect = 0.90
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 85 YMLVLAPSLLSVFGLAAGVASIMASV---KWYIDHNITWLFIASVMSTVVSLASFVMVAV 141
++ +L +FG + S + ++ ++Y H+I +F V+ VV++ SF +VA+
Sbjct: 317 FLTACISALYILFGAFVALPSTLRALVEQRYYTLHSIYKIFRIMVLCGVVTIFSFSLVAL 376
Query: 142 WFASTSEGEIT 152
F S + T
Sbjct: 377 IFCSNTNNNST 387
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 331 VSNPEATPSVHSDALNTIPEVASAEINLENERKATTSPLSWGDTPDHTVYNQNTLNLENI 390
+++ A+P+ SD LN E A N + + S DT + + N ++N+
Sbjct: 30 INSTRASPN-GSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNV 88
Query: 391 FNFTKKVDAKNEEPSEND 408
N KK D N E +E +
Sbjct: 89 NNNDKKEDEDNVEENEEE 106
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 18 LYPSERRYSASTVSGLAWVHIALSATSFL 46
L PS R T +G+ W HI L+ S L
Sbjct: 744 LPPSARAQHVPTTAGVEWSHITLAGASTL 772
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 8.4
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 277 YPNKKIKKIYLAQDENGFYLKNQNNKVKQNTETSSEIYKERMMNFLNRCASLEGVSNPEA 336
Y + + + + FY + + NT + S R NF +R +S + S+ +
Sbjct: 26 YTHTRTGTSFFMYQKEAFYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRS 85
Query: 337 TPSVHSDALNTIPEVASAEINLENERKATT 366
+S +L+ PE I +EN + T
Sbjct: 86 ----YSSSLSRSPEEPLRTILVENLTRNVT 111
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 278 PNKKIKKIY--LAQDENGFYLKNQNNKVKQNTETSSE 312
P K KKI L QDE+ + + +N QNT SE
Sbjct: 25 PLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVESE 61
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 232 NNYKDDSSEPRGKCISVVTKIKG 254
N+Y S+ P+ KCI V IKG
Sbjct: 467 NDYTLSSNGPQSKCIKCVVDIKG 489
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 8.4
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 298 NQNNKVKQNT--ETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAE 355
N + + +T TS+ I ++N S +++ +TP S ALNT P + S+
Sbjct: 1603 NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNS--STPITSSTALNTSPPITSST 1660
Query: 356 INLENERKATTSPLSWGDTP--DHTVYNQNT 384
+ + + T+S + TP TV N +T
Sbjct: 1661 V-VNSSTPITSSTVVNTSTPITSSTVVNSST 1690
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.127 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,292
Number of Sequences: 5004
Number of extensions: 79591
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 8
length of query: 410
length of database: 2,362,478
effective HSP length: 74
effective length of query: 336
effective length of database: 1,992,182
effective search space: 669373152
effective search space used: 669373152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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