Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001381-TA|BGIBMGA001381-PA|undefined
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 34 0.18
01_07_0326 - 42750189-42750965 31 1.7
05_05_0266 - 23694466-23696787,23696885-23697187 31 2.2
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 30 3.9
02_02_0724 + 13349419-13349641,13349880-13349974,13350366-133506... 30 3.9
10_01_0168 - 1883380-1883594,1884572-1888325 29 5.1
02_05_0439 + 29014323-29014853,29014958-29015341,29015422-290155... 29 5.1
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 6.8
05_04_0301 + 19983073-19983196,19984508-19985105,19985190-199854... 29 6.8
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 29 6.8
10_06_0079 + 10429217-10429444,10430058-10430303,10430701-104307... 29 8.9
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 29 8.9
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 34.3 bits (75), Expect = 0.18
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 232 NNYKDDSSEPRGKCISVVTKIKGNDP---KHIPRNGKLLKPKPDLIEHYPNKKIKKIYLA 288
N K+ + E TKI+ + K + R K+ K + +E + N++ K +
Sbjct: 187 NKLKEINEEYNNSMKCEWTKIRDKELYFYKELARVKKVKKNEDMAVEIFKNQETKIEQIK 246
Query: 289 QDENGFYLKNQNN--KVKQNTETSSE---IYKERMMNFLNRCASLEGVSNPEATPSVHSD 343
+ E Y K + N K+ E +E ++ E +N +E + N ++D
Sbjct: 247 RKEKDKYCKEEQNLGKILSEEEQWAENERLFLESYEEEINLINEMENIENEIDNAEQYND 306
Query: 344 ALNTIPEVASAEINLENERKATTSPLSWG 372
+NT+ EV NL+N +A L G
Sbjct: 307 FINTLDEVGLH--NLDNAMEAMEVDLGTG 333
>01_07_0326 - 42750189-42750965
Length = 258
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 331 VSNPEAT-PSVHSDALNTIPEVASAEINLENE 361
VS P+ P+ HS A+N +PEVA +E ++ E
Sbjct: 117 VSPPQPPMPAAHSRAINVVPEVAKSERQMDEE 148
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 331 VSNPEAT-PSVHSDALNTIPEVASAEINLENE 361
+S P+ P+ HS A+N +PEVA +E ++ E
Sbjct: 694 ISPPQPPMPAAHSRAINVVPEVAKSERQMDEE 725
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 29.9 bits (64), Expect = 3.9
Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 225 ISYRGMRNNYKDDSSEPRGKCISVVTKIKGNDPKHIPRNG-KLLKPKPDLIEHYPNKKIK 283
++Y +N + S + + +I G + + G ++L D + YPN K
Sbjct: 2285 LAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRK 2344
Query: 284 KIYLAQDENGFYLKNQNNKVKQNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSD 343
+E+ +K + NT T+ + ++ER + R A T SD
Sbjct: 2345 TSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTR-------TRQEISD 2397
Query: 344 ALNTIPEVASAEINLENERKATTSPLS 370
A + + +V ++ L+ + P S
Sbjct: 2398 AASIVQDVRYIDLELDGCEQVNEVPYS 2424
>02_02_0724 +
13349419-13349641,13349880-13349974,13350366-13350653,
13352838-13352963,13353045-13353204,13354142-13354190,
13354502-13354772,13356071-13356196,13357076-13357231,
13357815-13358058,13358181-13358627,13359348-13359478
Length = 771
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 61 PNNTTESLNSINGTANSSFVADNGYMLVLAPSLL 94
PN T L+ ++G + SF+ D+ V +P LL
Sbjct: 681 PNTVTSMLDPVSGLGHQSFITDDALDQVFSPPLL 714
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 309 TSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAEINLENERKATTSP 368
TS + ++ ++ C+++ + N + L + E ++ +N+EN+ K T
Sbjct: 672 TSLQTLTYFVVGAISGCSTVRELQNLNLCGELELCGLENVSEAQASTVNIENKVKLTHLS 731
Query: 369 LSWGDTPDHTV 379
L W + DH V
Sbjct: 732 LEWSN--DHLV 740
>02_05_0439 +
29014323-29014853,29014958-29015341,29015422-29015590,
29015772-29015878,29016034-29016258
Length = 471
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 351 VASAEINLENERKATTSPLSWGDTPDHTVYN---QNTLNLENIFNFT 394
V ++ + E++A+ PLSW DT + + Q T+ + +I +FT
Sbjct: 304 VTEEQLQIAKEKEASGEPLSWADTRRMKMTSRVIQETMRVASILSFT 350
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 29.1 bits (62), Expect = 6.8
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 26 SASTVSGLAWVHIALSATSFLLACLALVNPDEGKQPNNTTESLNSINGTANSSFVADNGY 85
S ST S L V AL AT A + P T +L ++ G VAD
Sbjct: 422 SESTESVL--VASALIATLTFAAAFTMPGSYRTTGPKEGTPALGALYGF-KVFLVAD--- 475
Query: 86 MLVLAPSLLSVFGLA--AGVASIMASVKWYIDHNITWLFIASVMSTVVSLASFVMVAVWF 143
+L S+ + F LA ++ V+ WLF ++ S +V+ A V V +W
Sbjct: 476 ILAFFCSVAATFSLAEYGNRGTVDPLVRCRYSQRAVWLFHVALRSIIVAFAFGVSVVMWN 535
Query: 144 ASTS 147
S S
Sbjct: 536 ISLS 539
>05_04_0301 +
19983073-19983196,19984508-19985105,19985190-19985442,
19985947-19985979
Length = 335
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 299 QNNKVKQNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAEINL 358
+NN + E E K R F + +EG S+ A + +N P V ++N
Sbjct: 154 KNNAARTVEERIEEYNKARARIFNGSISDIEGTSDLGALSVARDEPINVEPPVDENKVNT 213
Query: 359 ENER 362
N R
Sbjct: 214 MNSR 217
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 29.1 bits (62), Expect = 6.8
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 35 WVHIALSATSFLLACLALVNPDEGKQPNNTTESLNSINGTANSSFVADNGYMLVLAPSLL 94
+ HI AT FLL + L+ P G +E ++S A S + A +L L+ +LL
Sbjct: 263 FAHIGGFATGFLLGFVLLIQPQFG-----WSEQVSS----AKSKYNAFQIILLTLSVALL 313
Query: 95 SVFGLAAGVASIMASV 110
+ G AAG+ S+ V
Sbjct: 314 -IAGFAAGLVSVFKGV 328
>10_06_0079 +
10429217-10429444,10430058-10430303,10430701-10430746,
10430796-10431000,10432114-10432225
Length = 278
Score = 28.7 bits (61), Expect = 8.9
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 271 PDLIEHYPNKKIKKIYLAQDENGFYLKNQNNKVKQNTETSSEIYKERMMNFLNRCASLEG 330
P L E + +KI++ Y + F L +N +Q E E+ K+R M+F + S EG
Sbjct: 196 PHLCELF--EKIEQQYATLERQEFLLIREN---EQTNELKGELDKQREMSFCSSTFSSEG 250
Query: 331 VS 332
S
Sbjct: 251 FS 252
>06_03_0868 -
25544933-25544938,25544939-25545142,25545494-25545751,
25546625-25546906
Length = 249
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 199 FTTGVLSINILIAAFLEVLWSILSVKISYRGMRNNYKDDSSEPRGKCI 246
FT SI I +AAF+ V W+ +++S R R K + PR +
Sbjct: 142 FTFFATSIGI-VAAFISVFWAFGYIRLSQRLKRTANKPAKAPPRADVV 188
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.127 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,784,441
Number of Sequences: 37544
Number of extensions: 418539
Number of successful extensions: 820
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 12
length of query: 410
length of database: 14,793,348
effective HSP length: 84
effective length of query: 326
effective length of database: 11,639,652
effective search space: 3794526552
effective search space used: 3794526552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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