Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001381-TA|BGIBMGA001381-PA|undefined
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11470.1 68418.m01339 bromo-adjacent homology (BAH) domain-co... 32 0.60
At4g10720.1 68417.m01752 ankyrin repeat family protein contains ... 32 0.80
At2g38550.1 68415.m04736 expressed protein contains Pfam profile... 30 2.4
At1g31780.1 68414.m03901 conserved oligomeric Golgi complex comp... 29 5.6
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 7.4
At3g27820.1 68416.m03470 monodehydroascorbate reductase, putativ... 29 7.4
At1g70120.1 68414.m08069 hypothetical protein 29 7.4
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 28 9.8
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 28 9.8
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 28 9.8
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 28 9.8
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 28 9.8
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 28 9.8
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 28 9.8
>At5g11470.1 68418.m01339 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 691
Score = 32.3 bits (70), Expect = 0.60
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 232 NNYKDDSSEPRGKCISVVTKIKGNDPKHIPRNGKLL---KPK--PDLIEHYPNKKIKKIY 286
N + DS+EP I ++ KI + KHIP+ KLL KP +E PN +++
Sbjct: 50 NASEPDSTEP---FIGMIIKIWEHANKHIPKKVKLLWFFKPSEIAPYLEGVPNVLANEVF 106
Query: 287 LAQDENGFYLKNQN 300
LA E G L N N
Sbjct: 107 LASGE-GLGLANTN 119
>At4g10720.1 68417.m01752 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 445
Score = 31.9 bits (69), Expect = 0.80
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
Query: 15 TRNLYPSERRYSASTVSGLAWVHIALSATSFLLACLALVNPDEGKQPNNTTESLNSINGT 74
T +L+ RY T G + ++A + P G N E GT
Sbjct: 270 TEHLFTQTARYRNQTSEGTRSALLVIAALIITATYQTALQPPGGVYQENAAEESKKSVGT 329
Query: 75 ANSSFVADNGYMLVL-APSLLSVFGLAAGVASIMASVKWYIDHNITWLFIASVMSTVVSL 133
V + Y VL + ++ G ++ + + Y+ + W+ + +S +VS+
Sbjct: 330 V----VMSHKYFFVLRGVNTMAFVGAIFMAFCLLPAGEGYVWWFL-WIAVPLYVSYLVSM 384
Query: 134 ASFVMVAVWFASTSEGEI 151
+ VW+ ST+ G +
Sbjct: 385 SVISPDTVWYVSTNAGSV 402
>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 335
Score = 30.3 bits (65), Expect = 2.4
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 291 ENGFYLKNQNNKVKQNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPE 350
E+G + + + + +TS E +K+ + +F + + ++ VS+ EA SV+S T+ +
Sbjct: 83 ESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQVSKMQSVSS-EAY-SVNSQKAMTVLK 140
Query: 351 VASAEINLENER 362
S ++ ++ E+
Sbjct: 141 ETSEQLRIQAEK 152
>At1g31780.1 68414.m03901 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to Conserved oligomeric Golgi complex component
6 (Swiss-Prot:Q9Y2V7) [Homo sapiens];
Length = 706
Score = 29.1 bits (62), Expect = 5.6
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 33 LAWVHIALSATSFLL-ACLALVNPDEGKQPNNTTESLNSINGTANSSFVADNGYMLVLAP 91
L W+H AL++ L+ A + + D NT+E++ G ++ +FV D + V P
Sbjct: 311 LGWLHQALASERELVHALFDIDSADHQSNAKNTSENIALKAGESDFTFVLDRIFEGVCRP 370
Query: 92 SLLSVFGLAAGVASIMASVK 111
+ V + S++ S K
Sbjct: 371 FKVRVEQVLQSQPSLIISYK 390
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 177 SSHVIVALNSTKVSEESQGSRVFTTGVLSINILIAAFLEVLWSILSVKISYRGMRNNYKD 236
++ +I+ + + +V + + + + +L+ A E L SILS++ S R + KD
Sbjct: 819 AADLILVMQNGRVMQAGKFEELLKQNI-GFEVLVGAHNEALDSILSIEKSSRNFKEGSKD 877
Query: 237 DSS 239
D++
Sbjct: 878 DTA 880
>At3g27820.1 68416.m03470 monodehydroascorbate reductase, putative
similar to cytosolic monodehydroascorbate reductase
GB:BAA77214 [Oryza sativa]
Length = 488
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 84 GYMLVLAPSLLSVFGLAAGVASIMASVKWYIDHNITWLFIASVMSTVV 131
G++L AP+ L F G + KWY DH I + V S V
Sbjct: 52 GFLLPEAPARLPSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDV 99
>At1g70120.1 68414.m08069 hypothetical protein
Length = 193
Score = 28.7 bits (61), Expect = 7.4
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 23 RRYSASTVSGLAWVHIALSATSFLLACLALVNPDEGKQPNNTTESLNSINGTANSSFVAD 82
RR S T L + + + A + LLAC L N + PN S++ + ++
Sbjct: 5 RRTSGDTSGELRLLGLLILAWAILLACGLLANQETPVAPNIEIASMDFTVRNITQTRLSA 64
Query: 83 NGYMLVLAPSLL 94
N +L+ PS L
Sbjct: 65 NWDLLIRVPSNL 76
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 280 KKIKKIYLAQDENGFYLKNQNNKVKQNTETSSEIYK 315
K+ KK A+DE +K ++N NTETSSEI K
Sbjct: 102 KREKKKIKAEDETEPSMKGKSNM--SNTETSSEIQK 135
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 280 KKIKKIYLAQDENGFYLKNQNNKVKQNTETSSEIYK 315
K+ KK A+DE +K ++N NTETSSEI K
Sbjct: 102 KREKKKIKAEDETEPSMKGKSNM--SNTETSSEIQK 135
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 302 KVKQNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVA 352
KV+ + E+S Y NFL+R + L+G + PS + D+L P +A
Sbjct: 76 KVESSAESSPSSYDHTNGNFLSRLSPLQG---RKIEPSSNVDSLPVSPSLA 123
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 9.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 112 WYIDHNITWLFIASVMS 128
WY+ H I+++F+ASV+S
Sbjct: 314 WYLGHCISYIFVASVLS 330
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 9.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 112 WYIDHNITWLFIASVMS 128
WY+ H I+++F+ASV+S
Sbjct: 314 WYLGHCISYIFVASVLS 330
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 9.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 112 WYIDHNITWLFIASVMS 128
WY+ H I+++F+ASV+S
Sbjct: 314 WYLGHCISYIFVASVLS 330
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 9.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 112 WYIDHNITWLFIASVMS 128
WY+ H I+++F+ASV+S
Sbjct: 314 WYLGHCISYIFVASVLS 330
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.127 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,280,968
Number of Sequences: 28952
Number of extensions: 377544
Number of successful extensions: 811
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 14
length of query: 410
length of database: 12,070,560
effective HSP length: 83
effective length of query: 327
effective length of database: 9,667,544
effective search space: 3161286888
effective search space used: 3161286888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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