Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001380-TA|BGIBMGA001380-PA|IPR000357|HEAT
         (1377 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   3.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   4.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 393 TARNHGRRAYWSYQRLFPAEAELL 416
           T RN+GRR   +Y  L+P+  +++
Sbjct: 207 TLRNYGRRINCTYVALYPSSVQVI 230


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled receptor
            protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 1261 YMFWKLRVHQQAARG-VHPTTTRQQRDNDVAEDAAHSHARHADVTRARRPVLPSL 1314
            Y+  + R+ ++A +  ++   + + R+ D AE++  S   H + +  R    PSL
Sbjct: 220  YLATRRRLRERARQSRINAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSL 274


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,274
Number of Sequences: 429
Number of extensions: 11511
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 1377
length of database: 140,377
effective HSP length: 66
effective length of query: 1311
effective length of database: 112,063
effective search space: 146914593
effective search space used: 146914593
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)