GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001380-TA|BGIBMGA001380-PA|IPR000357|HEAT
         (1377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    62   5e-10
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    29   4.5  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    29   6.0  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    29   6.0  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    28   7.9  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 8/208 (3%)

Query: 227 WEKRVDALKKIRALLTANVHQQYPVEFAAHLKDLSIPFLVVIKDLRSQVVREACITIAHM 286
           W  R D++ ++R  L  N    Y  E  + LK L    L+ +  LR+ +   A   I  M
Sbjct: 293 WSVRQDSVLRLRQYLRGNACIDYLPELLSVLKTLLPGILLALLSLRTTLSSSAIQLIKEM 352

Query: 287 AKVLKNKMEQFSLYILQELINLIQNAAKVVSSAGTVCVQYIV--SFVHSPRLIPVLLTNL 344
           A +LK+ ++ F   IL  L+ +     K+ S A  V    I+    V S  L  + L   
Sbjct: 353 AIILKSNIDPFLELILPNLLKVCSVTKKLASQAANVTFAAILVNCGVLSRNLSFISLAAH 412

Query: 345 TSNKSKEIRSTLSEVLVMILEKWPA-QTIEKQQQNIRDAIRVAC---VDADSTARNHGRR 400
            +N   ++R   S  + M++   P  + +   Q N++   ++ C    D++S  R   R+
Sbjct: 413 DTNA--QLRVFSSNWIFMLISLSPELKNLASLQTNLKAFEKLICRGLADSNSQVREVYRK 470

Query: 401 AYWSYQRLFPAEAELLFERLDAAAQKQL 428
           ++W     FP+  E L   L+ +  KQL
Sbjct: 471 SFWKLSEYFPSVQEELTNTLEPSVLKQL 498


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 269 KDLRSQVVREACITIAHMAKVLKN-KMEQFSLYILQELINLIQNAAKVVSSAGTVCVQYI 327
           KD+R   + +    + + A  LKN K+E F    L  L+  + +A+  V      CV  I
Sbjct: 16  KDIRYMALSDLAARL-NDANHLKNLKLESFP-DTLDVLLQALSDASPEVQQEAVRCVAII 73

Query: 328 VSFVHSPRL---IPVLLTNLTSNKSKEIRSTLSEVL 360
            S +   +L   +  LL+ +   KSK   S LS +L
Sbjct: 74  SSKIPQDKLKSTVENLLSGVAGKKSKNYLSALSLLL 109


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 57  DMYRHVGERLRQDLKKKELLP-AQKLALLEQ--KFDETREA 94
           + YRH+ + L + L+ K+LL  A   AL EQ  K+ ET EA
Sbjct: 95  EYYRHISKDLSEPLRIKQLLLWASSKALEEQRKKYGETEEA 135


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 231 VDALKKIRALLTANVHQQYPVEFAAHLKDLSIPFLVVIKDLRSQVVREACITIAHMAKVL 290
           + ALK+   LL  ++  Q   EF  +    +I   V+ KD    V+ EAC+T       L
Sbjct: 686 IPALKEDLKLLVTDICDQTVTEFLKNFGSFNIQDAVITKD--EFVIFEACLTRIEGCTSL 743

Query: 291 KNKME--QFSLYILQELINLI 309
           K+  +  +F + I + L++L+
Sbjct: 744 KDFSDYPEFDI-IYERLVSLL 763


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 232 DALKKIRALLTANVHQQYPVEFAAHLKDLSI-PFLVVIKDLRSQVVREACITIAHMAKVL 290
           D+  + R ++ AN  +   V   + +KD  I PF++++KD   +V R     I    ++L
Sbjct: 256 DSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELL 315

Query: 291 -KNKMEQFSLYILQELIN 307
            K  + +  + ++QELIN
Sbjct: 316 DKRIVLEEIIPVIQELIN 333


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,945,725
Number of Sequences: 5004
Number of extensions: 172278
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 8
length of query: 1377
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1295
effective length of database: 1,952,150
effective search space: 2528034250
effective search space used: 2528034250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)