GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001379-TA|BGIBMGA001379-PA|IPR002659|Glycosyl
transferase, family 31
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    30   0.74 
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    30   0.74 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   1.3  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    29   2.2  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    28   3.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   3.0  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    28   3.9  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   5.2  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    27   6.9  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   9.1  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   9.1  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    27   9.1  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    27   9.1  

>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 243 YNFESNVMRIPPRGFEDNPDLDKVLSILKLDKRFLKVEEKLRNTKVEPDFKLAFILGLPV 302
           YN    + R+ P  FE    L + L++L  D R    +  L+   + P+   +   G P 
Sbjct: 158 YNLLKQINRMVPYNFERTTPLIESLTMLSRDFREYSEKFDLQGDSILPEVVYSATKGNPR 217

Query: 303 NDS-NSAVQRKIDEEIDKYGDIIQEDFIDSYNNLTLKS 339
            +   +  Q   +E ++ + D + E+F+    +  LK+
Sbjct: 218 FEMLQTGEQEDAEEFLNLFLDELHEEFVRERRHYLLKN 255


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 211 LESEAPEKRFDDEMLPEFDMNREIGEQTENYDYNFESNVMRIPPRGFEDNPDLDKVLSIL 270
           ++  A  +RF D M  +   N    +  E Y +  E   M   P  +ED    D  LSIL
Sbjct: 1   MDFHAISQRFIDMMRSKNSQNAS--QPPETYPFYHEVRQMSQHPWMYEDPELQDYALSIL 58

Query: 271 KLDKRFLKVEE 281
            LDK F    E
Sbjct: 59  PLDKLFQDASE 69


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 179  LIGKSKRMKREIADLSNLLPHLAAALRD-----NVDNLESEAPEKRFDDEMLPEFDMNRE 233
            L  + +R ++E+AD  N L HL +   D      + NLE E  E R D E L        
Sbjct: 1489 LKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLV------- 1541

Query: 234  IGEQTENYDYNFESNVMRIPPRGFEDNPD-LDKVLSILKLDKRFLKVEEK 282
              +Q +N      +     P +G  +N D + ++ S L+  K++ + E++
Sbjct: 1542 --QQVQNLSAELAALREHSPTQGSLENADEIARLRSQLESTKQYYEKEKE 1589


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 311 RKIDEEIDKYGDIIQEDFIDSYNNLTLKSIMMLKWINNKCKD 352
           R++DE I +   +IQ    +  NNL+L    ++K+I +K  D
Sbjct: 581 RELDELIIETNPLIQRATTELINNLSLSPYCLIKFIGDKDSD 622


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 126 GLFLLIVVCSATGNFEQ--RQAIRDTWGSQARYTEIRKVSVKIREKYKNYNYSYDL-IGK 182
           G +  I+V       EQ  RQA + ++G+  +  E+ K + KI+EK       YD+ IG 
Sbjct: 114 GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGT 173

Query: 183 SKRMKREI 190
             R+ + I
Sbjct: 174 PMRLVQAI 181


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 166  IREKYKNYNYSYDLIGKSKRMKREIADLSNLLPHLAAALRDNVDNLESEAPEKRFDDEML 225
            IR  + + N  Y +IG+   + R+I+ +  ++P  A    DNVD    +  ++ F    L
Sbjct: 1006 IRATFTSLNDEY-MIGEDPELTRKISPVEGIIPEDANVRFDNVDIFLYDC-DQHFSTVCL 1063

Query: 226  PEFDMNREIGEQ 237
               +M+ E  E+
Sbjct: 1064 YSANMHMEFREK 1075


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 272 LDKR-FLKVE--EKLRNTKVEPDFKLAFILGLPVNDSNSAVQRKIDEEIDKYGDI 323
           +D+R FL+ +  E ++   V     + FILGLP N+   A    I EE   YGD+
Sbjct: 77  VDRRNFLRTDYNEYIKEFAVNDTVDVRFILGLPENEQELAT---IREEQRTYGDL 128


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 144 QAIRDTWGSQARYTEIRKVSVKIREKYKNYNYSYDLIGKSKRMKREIADLSNLLPHL 200
           QA+ +   + A + + R   + +R K K+  +S+D+    + ++     L+NLL HL
Sbjct: 297 QAVSNVTSAHALFPQYRIDMLTLRMKVKD-PFSFDMFRFGQAIESTFRSLNNLLEHL 352


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 178 DLIGKSKRMKREIADLSNLLPHLAAALRD--NVDNLESEAPEKR--FDDEMLPEFD 229
           D+     ++  +I+D+ NL+P L    RD   +  +    P+ R  FD   LP+ D
Sbjct: 166 DINDPRAKLLNDISDVQNLMPRLLPCTRDWFAIYKIPDGKPKNRFFFDGNYLPKSD 221


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 261 PDLDKVLSILKLDKRFLKVEEKLRNTKVEPDFKLAFILGLPVNDSNSAVQRKIDEEIDKY 320
           PDLDK+  IL+ D+  +          V PD  + F LG  + DS+      ++ E++  
Sbjct: 116 PDLDKLSDILRSDEYMI---------SVLPDDSVLFSLGDEL-DSDFEDDNTLEIEVENP 165

Query: 321 GDIIQEDFIDSYNNLTLKSIMMLKWINNKCKDKVRYILKTDDD 363
            D+ ++  I     L L++ +++  +    KDK+  +     D
Sbjct: 166 ADVSKDAEI---KKLKLQNQLLISQLEEIRKDKMNELTSQTTD 205


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%)

Query: 160 RKVSVKIRE-KYKNYNYSYDLIGKSKRMKR--EIADLSNLLPHLAAALRDNVDNLESEAP 216
           RK S +++E + KNY+ S DL+ K+ R+ R  E  + +N    L  + +      +SE P
Sbjct: 609 RKASSQVKELEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVSPQQ-----KSEVP 663

Query: 217 EKRFDDEMLPEFDMNREIGEQTE 239
            KR  +E+      NR+  E +E
Sbjct: 664 PKR--NELSQSKLKNRKKKENSE 684


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 95  WS--VHSNRDT-KLYVRPQNVTVVHEPTALCTGAGLFLLIVV 133
           WS  +HS R   KLY +P+ +  +  P  LC    + +LI V
Sbjct: 212 WSDLLHSYRQPLKLYAKPEELGDMFWPFLLCFSPSIIMLITV 253


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 416 YSPRYMYNARVYPKYLSGTGYVMSV 440
           Y+  YM+NA +Y  + + + Y++SV
Sbjct: 40  YTKSYMHNAEIYKCFPTKSNYILSV 64


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,241
Number of Sequences: 5004
Number of extensions: 111865
Number of successful extensions: 281
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 13
length of query: 557
length of database: 2,362,478
effective HSP length: 76
effective length of query: 481
effective length of database: 1,982,174
effective search space: 953425694
effective search space used: 953425694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)