Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001378-TA|BGIBMGA001378-PA|undefined
         (130 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.93 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   1.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   1.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   4.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   4.9  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    20   6.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 0.93
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 20   GVTEKPLYIEDNT--NGYYSDASNSVIRRVNVPKEPSPTYMAPVET 63
            G  E PL    N    GY       ++ R N   +P PT M P  T
Sbjct: 2175 GCEEYPLLRTINRVLRGYAKPDPKCILGRDNDKTKPKPTTMKPTTT 2220


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
          neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 48 NVPKEPSPTYMAPVETRRKSIHPVPEN 74
          N PK+ +  Y+ P  +  + + P P+N
Sbjct: 15 NTPKDMNARYLPPSLSDTRPMLPYPQN 41


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   FVRMFVVSSHSKYLHSADGVTEKPLYIEDNTNGYYSDASNSVIRRVNVPKEPSPT 56
           F+R   ++ H K  H+ +G         D+     SD +N+V    ++ + P PT
Sbjct: 384 FMRSDHLAKHVK-THNGNGKKGSSDSCSDSEENSQSDITNNVNSPASMNQTPPPT 437


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 38  DASNSVIRRVNVPKEPSPT 56
           +A N+ ++   +P EP PT
Sbjct: 380 NAINAALKSDEIPPEPVPT 398


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 50  PKEPSPTYMAPVETRRKSIHPVPENS 75
           P  PS     PV+T  K    VPE S
Sbjct: 416 PSTPSADGSKPVQTTPKPGQWVPEKS 441


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 46  RVNVPKEPSPTYMAPVETR 64
           ++++P+E SPT    + T+
Sbjct: 415 QISIPEEASPTNSTTITTQ 433


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,757
Number of Sequences: 317
Number of extensions: 1034
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 114,650
effective HSP length: 50
effective length of query: 80
effective length of database: 98,800
effective search space:  7904000
effective search space used:  7904000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)