Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001378-TA|BGIBMGA001378-PA|undefined
         (130 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)          27   6.4  
SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)             27   6.4  
SB_59485| Best HMM Match : Dickkopf_N (HMM E-Value=0.2)                27   6.4  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     26   8.5  

>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
          Length = 1623

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 2    FVRMFVVSSHSKYLHSADGVTEKPLY 27
            F+   +VS H K+L   D + + PLY
Sbjct: 1417 FLLEMLVSRHEKHLSQIDAINDMPLY 1442


>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
          Length = 366

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 9   SSHSKYLHSADGVTEKPLYIEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSI 68
           ++H+   H     T  P       +  +++  N        PK+P+ TY     T ++ I
Sbjct: 224 TTHTTQQHIQPNNTNNPTTQTTKRHIQHNNTYNPTAHTTQQPKQPNDTYNTTTHTTQQHI 283

Query: 69  HP 70
            P
Sbjct: 284 QP 285


>SB_59485| Best HMM Match : Dickkopf_N (HMM E-Value=0.2)
          Length = 450

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 2   FVRMFVVSSHSKYLHSADGVTEKPLYIEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPV 61
           FV+ F      +YL    GV  +P   ++  NG          +++ VP     T +A V
Sbjct: 246 FVKTFTDRRRRRYLLKY-GVWPEPEEDKEKENGESQPRDGGTSKKLEVPTITVETPVASV 304

Query: 62  ETRRKSIHPVPENSEEV 78
              RK    V  ++EE+
Sbjct: 305 ANDRKHKPDVEPDAEEI 321


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 32  TNGYYSDASNSVIRRVNVPKEPSPT--YMAPVETRRKSIHPVPENSE 76
           T+ Y + A   V    + P + + T  Y APVET +     VP N+E
Sbjct: 733 TDTYSTPAQTQVTDTYSTPAQTTETQNYNAPVETTQSPETTVPYNAE 779


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 22  TEKPLYIEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSIHP--VPENSEEV 78
           TE+ LY + ++       S +  R +N+P      YM  ++  RK+     VPE  E V
Sbjct: 631 TERTLYNDSDSRLGGMSTSLAEFRTINLPGSSVTKYMERIDEIRKNSQRTIVPEEKESV 689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,818,535
Number of Sequences: 59808
Number of extensions: 138455
Number of successful extensions: 264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 7
length of query: 130
length of database: 16,821,457
effective HSP length: 75
effective length of query: 55
effective length of database: 12,335,857
effective search space: 678472135
effective search space used: 678472135
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 55 (26.2 bits)