GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001378-TA|BGIBMGA001378-PA|undefined
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   1.2  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   2.2  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.0  

>SPBC18H10.04c |sce3|tif48|translation initiation factor
          eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 18 ADGVTEKPLYIEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPVETRRK 66
          AD + + P   +D T   Y    +S     N P     +  +P E+RR+
Sbjct: 26 ADDIDDLPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESRRE 74


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 102 DEKRRRYNRISSEVDKNVVSLEDNSANKK 130
           D  RRR+N  SSE DK   +++D ++ K+
Sbjct: 11  DTLRRRFNDSSSEEDKLEKNIQDETSIKE 39


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 19  DGVTEKPLYIEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSIHPVPENSE 76
           D ++  P+  EDN   Y    S  ++   +  K P+   M     ++K +  V E  E
Sbjct: 83  DVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKE 140


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 47   VNVPKEPSPTYMAPVETRRKSIHPVP 72
            V VP  P P+   PV T    + PVP
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVP 1230


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,278
Number of Sequences: 5004
Number of extensions: 20043
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 2,362,478
effective HSP length: 66
effective length of query: 64
effective length of database: 2,032,214
effective search space: 130061696
effective search space used: 130061696
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)