GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001378-TA|BGIBMGA001378-PA|undefined
         (130 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1083 - 8519987-8520254,8520442-8520554                           28   2.1  
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194...    28   2.8  
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706...    27   6.4  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    26   8.5  
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049...    26   8.5  

>01_01_1083 - 8519987-8520254,8520442-8520554
          Length = 126

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 102 DEKRRRYNRISSEVDKNVVSLEDNSANKK 130
           +EKR + +R+  +++K  V +EDN+A  K
Sbjct: 53  EEKRNQVHRLQDDIEKCHVLIEDNAAKLK 81


>02_05_0007 +
           24918163-24918420,24919360-24919410,24919411-24919480,
           24919645-24919830,24920127-24920275,24921310-24921417,
           24921501-24921638,24922574-24922853,24922924-24923047,
           24923197-24923312,24923612-24923619
          Length = 495

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 5   MFVVSSHSKYLHSADGVTEKPLYIEDNT---NGYYSDASNSVIRRVNVPKEPSP 55
           M V  S + +    D V   P Y   +    N YY+D +NS +   N P  P P
Sbjct: 164 MVVEPSETLFNDMMDKVNSLPSYTGGDQGFLNSYYADFANSRVYEPNKPTTPEP 217


>12_02_0738 +
           22669557-22669756,22669868-22669916,22670620-22670657,
           22670977-22671058,22671146-22671195,22671381-22671847,
           22671992-22672155,22672242-22672448,22672554-22672710,
           22672858-22672965,22673161-22673234,22673364-22673521,
           22673728-22673788,22673858-22673965
          Length = 640

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 28  IEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSIHPVPENSEEVG 79
           ++D  +    D  +  + + N+P+  SPT  A      +S H +P N   +G
Sbjct: 425 LKDRAHAKLDDIPSDFVMKNNIPEPISPTSAAAAGPSNRSDHQMP-NQGTIG 475


>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 43  VIRRVNVPKEPSPTYM---APVETRRKSIHPVPENSEEV 78
           VIRR+ + K+PS +     AP ET ++++   PE + EV
Sbjct: 860 VIRRI-IKKKPSGSARDSTAPAETSKQAVEVQPEKNNEV 897


>03_02_0880 -
           12103703-12103726,12103938-12104210,12104389-12104931,
           12105017-12105374,12105696-12105994,12106116-12106189,
           12106630-12106717,12107573-12107674,12107813-12107841,
           12108118-12108235
          Length = 635

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 40  SNSVIRRVNV-PKEPSPTYMAPVETRRKSIHPVPENSEEV 78
           S++V  +V+  PK P P  + P++ + KS+ PVP    EV
Sbjct: 100 SDNVPSKVSANPKVPPPPKIEPLKPKAKSV-PVPVQRTEV 138


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,404
Number of Sequences: 37544
Number of extensions: 111103
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 5
length of query: 130
length of database: 14,793,348
effective HSP length: 74
effective length of query: 56
effective length of database: 12,015,092
effective search space: 672845152
effective search space used: 672845152
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 55 (26.2 bits)