GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001378-TA|BGIBMGA001378-PA|undefined
         (130 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    30   0.60 
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    30   0.60 
Z83731-8|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z83731-7|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z54271-1|CAA91032.1|  550|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AL132864-4|CAH60767.1|  272|Caenorhabditis elegans Hypothetical ...    27   3.2  
U41508-5|AAG00025.2|  511|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF326938-1|AAG49388.1|  511|Caenorhabditis elegans XG314 protein.      27   4.2  
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U97593-3|AAB52876.1|  250|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AL034392-2|CAA22305.1|  120|Caenorhabditis elegans Hypothetical ...    26   9.8  

>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 19   DGVTEKPLYIEDNTN-GYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSIHPVPENS 75
            D V E P  IE+  N   YS++S SV R V  P EP         T  +  H  PE +
Sbjct: 3515 DEVEELPPKIEEEDNVSEYSESSTSVSREVR-PDEPHIIETTTTTTVTREYHNEPEET 3571


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 19   DGVTEKPLYIEDNTN-GYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSIHPVPENS 75
            D V E P  IE+  N   YS++S SV R V  P EP         T  +  H  PE +
Sbjct: 3515 DEVEELPPKIEEEDNVSEYSESSTSVSREVR-PDEPHIIETTTTTTVTREYHNEPEET 3571


>Z83731-8|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical protein
            F16A11.3b protein.
          Length = 1364

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 47   VNVPKEPSPTYMAPVETRRKSIHPVPENSEE 77
            +++P +P+PT   PV ++ +S  P+  +S +
Sbjct: 1328 LDIPMDPAPTLPPPVTSKNQSSSPITASSSD 1358


>Z83731-7|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical protein
            F16A11.3a protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 47   VNVPKEPSPTYMAPVETRRKSIHPVPENSEE 77
            +++P +P+PT   PV ++ +S  P+  +S +
Sbjct: 1454 LDIPMDPAPTLPPPVTSKNQSSSPITASSSD 1484


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical protein
            F16A11.3b protein.
          Length = 1364

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 47   VNVPKEPSPTYMAPVETRRKSIHPVPENSEE 77
            +++P +P+PT   PV ++ +S  P+  +S +
Sbjct: 1328 LDIPMDPAPTLPPPVTSKNQSSSPITASSSD 1358


>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical protein
            F16A11.3a protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 47   VNVPKEPSPTYMAPVETRRKSIHPVPENSEE 77
            +++P +P+PT   PV ++ +S  P+  +S +
Sbjct: 1454 LDIPMDPAPTLPPPVTSKNQSSSPITASSSD 1484


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 33  NGYYSDASNSVIRRVNVPKEPSPTYMA-PVETRRKSIHPVPENSE 76
           N +Y+  SN    +V    E    Y   P ETR +++HP+ +N +
Sbjct: 79  NTFYNGGSNHWCEQVRFEYENVEDYAKRPNETRGRTVHPLGKNDQ 123


>Z54271-1|CAA91032.1|  550|Caenorhabditis elegans Hypothetical
           protein F21D5.1 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 15  LHSADGVTEKPLYIEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAP 60
           LH A     +P + E   +GYYS  ++S  +   + +EP  +   P
Sbjct: 171 LHYAVKAFNEPKFAEPTHDGYYSAIADSFKKLYEITEEPKDSRYQP 216


>AL132864-4|CAH60767.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53H1A.5 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 47  VNVPKEPSPTYMAPVETRRKSIHPV 71
           VN+PK P+ TY  PV+  +KSI  +
Sbjct: 236 VNIPKAPAMTY-RPVQEEKKSIERI 259


>U41508-5|AAG00025.2|  511|Caenorhabditis elegans Hypothetical
           protein W01C8.5 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 25  PLYIEDNTNGYYSDASNSVIRRVNV 49
           PLYI D+ NG +S+ S +   RV +
Sbjct: 362 PLYIGDDENGGFSELSQNEAERVTI 386


>AF326938-1|AAG49388.1|  511|Caenorhabditis elegans XG314 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 25  PLYIEDNTNGYYSDASNSVIRRVNV 49
           PLYI D+ NG +S+ S +   RV +
Sbjct: 362 PLYIGDDENGGFSELSQNEAERVTI 386


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 28  IEDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSIHPVP 72
           ++ N N      +N +IR  ++P +PS T      T  K+IH  P
Sbjct: 68  VDKNRNRLLVAYNNQIIREYSIPLDPSTTKPELART-WKTIHTAP 111


>U97593-3|AAB52876.1|  250|Caenorhabditis elegans Hypothetical
           protein C46G7.2 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 28  IEDNTNGYYSDAS-NSVIRRVNVPKEPSPTYMAPVET 63
           + D  N  YSDA      R +N P +P  TY++P  +
Sbjct: 110 VHDWYNKSYSDARWRDTHREINKPYKPLDTYISPASS 146


>AL034392-2|CAA22305.1|  120|Caenorhabditis elegans Hypothetical
          protein Y40B1A.2 protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 20 GVTEKPLYIEDNTNGYYSDASNS 42
          GV EKP + ED  N Y    S+S
Sbjct: 54 GVNEKPRFAEDRYNEYIGQLSSS 76


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,287
Number of Sequences: 27539
Number of extensions: 105808
Number of successful extensions: 261
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 14
length of query: 130
length of database: 12,573,161
effective HSP length: 74
effective length of query: 56
effective length of database: 10,535,275
effective search space: 589975400
effective search space used: 589975400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)