GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001378-TA|BGIBMGA001378-PA|undefined
         (130 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43100.1 68418.m05261 aspartyl protease family protein low si...    28   1.8  
At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family prot...    27   3.1  
At5g15890.1 68418.m01859 expressed protein                             27   5.4  
At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein si...    27   5.4  
At5g26110.1 68418.m03106 expressed protein                             26   9.4  
At5g04320.1 68418.m00424 expressed protein                             26   9.4  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    26   9.4  

>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 29  EDNTNGYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKS-IHPVPENSE 76
           E++  G+     + + RR+  P+ P+PT  +P+   + S I P P  SE
Sbjct: 406 ENDKLGFLKTNCSDIWRRLAAPESPAPT--SPISQNKSSNISPSPATSE 452


>At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family
          protein contains Pfam PF04073: YbaK / prolyl-tRNA
          synthetases associated domain; similar to 25.7 kDa
          protein (GI:7271117) [Cicer arietinum]
          Length = 307

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 5  MFVVSSHSKYLHSADGVTEKPLYIEDNTNGYY 36
          +  V   +KY+ S+ G   K L+++D  + YY
Sbjct: 27 VLTVEEQAKYVSSSKGALSKNLFLKDKKHRYY 58


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 30 DNTN-GYYSDASNSVIRRVNVPKEPSPTYMAPVETRRKSIHPVPE 73
          D+T   + + +SN +   VN    P+P Y  P + R+ S H +P+
Sbjct: 51 DHTRLSHLNSSSNQIPSPVN-GSIPTPPYHTPSKHRKSSFHRIPK 94


>At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 20  GVTEKPLYIEDNTNGYYSDASNSVIRRVNVPKEP 53
           G T +P    DN N Y S+    V+ +   PK P
Sbjct: 279 GETNEPDATLDNANTYNSNLIRHVLNKTGTPKRP 312


>At5g26110.1 68418.m03106 expressed protein
          Length = 226

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 11  HSKYLHSADGVTEKPLYIEDNTNGYYSDASNSVIRRV 47
           HS  L   +GV+ K +++E  TNG   +  + V  ++
Sbjct: 85  HSLTLEYIEGVSVKDIFLEFGTNGVVEERLDDVAAQI 121


>At5g04320.1 68418.m00424 expressed protein
          Length = 419

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 102 DEKRRRYNRISSEVDKNVVSLEDNSANKK 130
           D KR+R  RI S V  +V  +  N +N K
Sbjct: 113 DTKRKRTTRIKSSVSADVKPIPVNDSNSK 141


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 49  VPKEPSPTYMAPVETRRKSIHPVPENSEEV 78
           V K P+PTY  PV+     + P P  S  V
Sbjct: 660 VQKPPTPTYSPPVKPPPVQLPPTPTYSPPV 689


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,790
Number of Sequences: 28952
Number of extensions: 94769
Number of successful extensions: 253
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 34
length of query: 130
length of database: 12,070,560
effective HSP length: 73
effective length of query: 57
effective length of database: 9,957,064
effective search space: 567552648
effective search space used: 567552648
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)