Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001376-TA|BGIBMGA001376-PA|undefined
         (119 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   7.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    19   9.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 75  HVCMMESTGTGHMCFCEEDMCNGAPAR 101
           H C      +G  C  E + C+ AP +
Sbjct: 168 HRCHCSDGYSGSYCQTEINECDSAPCQ 194


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 16  WSDPRCKDPFNYTALPRD 33
           W  P  KD  N+  L R+
Sbjct: 145 WEYPEAKDKENFITLLRE 162


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.136    0.487 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,537
Number of Sequences: 317
Number of extensions: 1027
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 119
length of database: 114,650
effective HSP length: 50
effective length of query: 69
effective length of database: 98,800
effective search space:  6817200
effective search space used:  6817200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.8 bits)
S2: 38 (19.4 bits)