Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001376-TA|BGIBMGA001376-PA|undefined
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   1.4  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    25   2.4  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    25   2.4  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    25   2.4  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   4.2  
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr...    25   4.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   4.2  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    24   5.6  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 8    IYCYECDSWSDP 19
            IYC+ C SW +P
Sbjct: 4057 IYCFTCSSWKEP 4068


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 68  INLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
           IN+ ++ HV   +ST TGH+ +     C G   RT
Sbjct: 8   INVVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 68  INLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
           IN+ ++ HV   +ST TGH+ +     C G   RT
Sbjct: 8   INVVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 68  INLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
           IN+ ++ HV   +ST TGH+ +     C G   RT
Sbjct: 8   INVVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 11  YECDSWSDPRCKDPFNYTALPRDQPPLQTCN 41
           Y+C +   PR     +Y++   D PP + CN
Sbjct: 71  YKCSNEECPRPGCYRSYSSNKEDHPPCEICN 101


>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 129

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 37 LQTCNGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMC 88
          ++ C+G  V     +   Y+ V++ C S +++  F +  + +  +T   H C
Sbjct: 41 IRDCSGIPVNNRNLAFKAYDAVKQKCDSSIKV--FNIQDITIKGATWQHHNC 90


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 21  CKDPFNYTALPRDQP 35
           C+D  +YTALP+  P
Sbjct: 354 CEDDVHYTALPKQNP 368


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 82  TGTGHMCFCEEDMCNGAP 99
           TG GHMCF    + N  P
Sbjct: 214 TGVGHMCFYPLSIINDEP 231


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.136    0.487 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,426
Number of Sequences: 5004
Number of extensions: 16835
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 48 (23.4 bits)