Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001376-TA|BGIBMGA001376-PA|undefined
         (119 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44070.1 68418.m05392 phytochelatin synthase 1 (PCS1) identic...    29   0.63 
At2g34150.1 68415.m04180 expressed protein                             29   0.63 
At3g47760.1 68416.m05203 ABC transporter family protein probable...    28   1.5  
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    28   1.5  
At1g76965.1 68414.m08961 glycine-rich protein                          28   1.9  
At4g24610.1 68417.m03525 expressed protein                             27   4.5  
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ...    27   4.5  

>At5g44070.1 68418.m05392 phytochelatin synthase 1 (PCS1) identical
           to phytochelatin synthase [Arabidopsis thaliana]
           gi|18254401|gb|AAL66747;  identical to cDNA
           phytochelatin synthase, GI:18254400
          Length = 485

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 37  LQTCNGCCVKMVRYSKSPYEVVRR---TCTSQLQINLFMVDHVCMMESTGTGH 86
           L  C+G  V+  R S+S  +  R+    CTS    ++    H  + + TGTGH
Sbjct: 110 LAHCSGAKVEAFRTSQSTIDDFRKFVVKCTSSENCHMISTYHRGVFKQTGTGH 162


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 28  TALPRDQPPLQTCNGCCVKMVRYSKSPYE 56
           ++LP   P ++T NGC V+ V Y ++P E
Sbjct: 521 SSLPVPFPKIETTNGCLVENVSYLQNPAE 549


>At3g47760.1 68416.m05203 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 872

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 51  SKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMCFCE 91
           S SPY + R+     +++    V H  M+E T TGH   C+
Sbjct: 514 SPSPYGLQRQVSAIAIEMEKLDVAHELMLE-TSTGHAIVCD 553


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 6   RTIYCYECDSWSDPRCKDPFNYTALPRDQPPLQTCNGCC 44
           R I C  C+ W   RC    +   LP    PL  C+ CC
Sbjct: 620 RMISCDVCEVWQHTRCCGIDDSDTLP----PLFVCSNCC 654


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 47  MVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHM 87
           +V + K P E V+   T   Q+NLF  D   ++E+T   HM
Sbjct: 97  IVVFPKKPEEPVKVVPTPMPQLNLFFGDDRRLLENTVCEHM 137


>At4g24610.1 68417.m03525 expressed protein 
          Length = 1145

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 45  VKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMME-STGTGHMCF 89
           V  +R + + Y++V+ T + +L++     D+  MM+  +G  H+ F
Sbjct: 385 VTSLRNNSTSYDIVQETYSCKLRLKSLAEDNAIMMQPGSGESHVFF 430


>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 566

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 8   IYCYECDSWSDPRCKD-PFNYTALPR-DQPPLQTCNG 42
           I C +CD + D RC   P   T LPR D  PL  C G
Sbjct: 423 IGCMKCDYFLDFRCATLPLTVT-LPRYDDHPLTLCYG 458


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.136    0.487 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,060
Number of Sequences: 28952
Number of extensions: 99072
Number of successful extensions: 235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 7
length of query: 119
length of database: 12,070,560
effective HSP length: 72
effective length of query: 47
effective length of database: 9,986,016
effective search space: 469342752
effective search space used: 469342752
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)