GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001376-TA|BGIBMGA001376-PA|undefined
         (119 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736...    27   3.0  
05_04_0317 + 20157849-20158364,20158465-20158628,20159471-201595...    26   7.0  
03_02_0372 + 7864015-7864065,7864167-7864208,7864292-7864322,786...    26   9.2  

>08_02_0250 +
           14772746-14773037,14773141-14773203,14773458-14773621,
           14774126-14774220,14774517-14774728,14774972-14775009,
           14775131-14775424,14775510-14775617
          Length = 421

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 21  CKD-PFNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRRT 61
           C D P+ Y  L + +P  +  +   + M  +S  PYE +R+T
Sbjct: 216 CADSPYPYEHLRKTEPACREIDEVTLTMCAHSPYPYEYLRKT 257


>05_04_0317 +
           20157849-20158364,20158465-20158628,20159471-20159522,
           20159618-20159845,20159928-20160464
          Length = 498

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 37  LQTCNGCCVKMVRYSKSPYEVVRR---TCTSQLQINLFMVDHVCMMESTGTGH 86
           L  C+G  V+  R +++    +RR    C S    +L    H  ++  TGTGH
Sbjct: 125 LAHCSGADVRTFRAAQATLADLRRHLLRCASSQDCHLVASYHRKLLGQTGTGH 177


>03_02_0372 +
          7864015-7864065,7864167-7864208,7864292-7864322,
          7864472-7864653
          Length = 101

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)

Query: 12 ECDSWSDPRCKDPFNYTALPRDQPPLQTCNGCCVK 46
          EC    D RC      +A  R +P L+ CN CC K
Sbjct: 42 ECPQKCDYRC------SATKRQEPCLKYCNICCQK 70


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.136    0.487 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,870
Number of Sequences: 37544
Number of extensions: 120718
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 3
length of query: 119
length of database: 14,793,348
effective HSP length: 73
effective length of query: 46
effective length of database: 12,052,636
effective search space: 554421256
effective search space used: 554421256
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)