Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001376-TA|BGIBMGA001376-PA|undefined
(119 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_31078| Best HMM Match : PHD (HMM E-Value=7.4e-09) 28 1.8
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 28 2.4
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 28 2.4
SB_6967| Best HMM Match : PHD (HMM E-Value=1.2e-08) 28 2.4
SB_21224| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 27 4.1
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08) 27 5.4
SB_38631| Best HMM Match : BAH (HMM E-Value=3.9e-10) 27 5.4
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 26 9.5
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 62 CTSQLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAP 99
C + Q N + + CM +S TG C EED C P
Sbjct: 586 CNNGAQCNNMVDGYRCMCKSGFTGKNCEVEEDECTTNP 623
>SB_31078| Best HMM Match : PHD (HMM E-Value=7.4e-09)
Length = 241
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 6 RTIYCYECDSWSDPRC--KDPFNYTALPRDQPPLQTCNGC 43
R I C ECD W +C +Y L D CN C
Sbjct: 22 RAIQCDECDMWYHTKCIAMTAQSYNRLGSDSQLAWLCNKC 61
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 38 QTCNGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGH 86
++C G + +++ P+E + RT T+ Q+N + H M TGT H
Sbjct: 1246 RSCTGDHIARHNHTQ-PHEQMNRTYTTHAQMNRTYITH-AQMNRTGTTH 1292
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 6 RTIYCYECDSWSDPRC--KDPFNYTALPRDQPPLQTCNGC 43
R I C ECD W +C +Y L D CN C
Sbjct: 119 RAIQCDECDMWYHTKCIAMTAQSYDRLGSDSQLAWLCNKC 158
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 6 RTIYCYECDSWSDPRC--KDPFNYTALPRDQPPLQTCNGC 43
R I C ECD W +C +Y L D CN C
Sbjct: 22 RAIQCDECDMWYHTKCIAMTAQSYDRLGSDSQLAWLCNKC 61
>SB_6967| Best HMM Match : PHD (HMM E-Value=1.2e-08)
Length = 410
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 6 RTIYCYECDSWSDPRC--KDPFNYTALPRDQPPLQTCNGC 43
R I C ECD W +C +Y L D CN C
Sbjct: 119 RAIQCDECDMWYHTKCIAMTAQSYDRLGSDSQLAWLCNKC 158
>SB_21224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/73 (21%), Positives = 28/73 (38%)
Query: 18 DPRCKDPFNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVC 77
D CK A PR + T N +V+ + + ++I ++D C
Sbjct: 128 DKHCKRGVLVVANPRSNANVFTRNRSGADVVKSFHERFANLLAASKEAIKIREILLDVTC 187
Query: 78 MMESTGTGHMCFC 90
++ T GH+ C
Sbjct: 188 LIGKTDVGHLKVC 200
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 QLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
++ IN+ ++ HV +ST TGH+ + C G RT
Sbjct: 5 KIHINIVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38
>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1181
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 19 PRCKDPFNYTALPRDQPPL 37
PR DPF+ LP D PPL
Sbjct: 134 PRWTDPFSEDLLPTDVPPL 152
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 13 CDSWSDPRCKDPFNYTALPRDQPPLQT-C---NGCCVKMV 48
C+ S P C Y PR+ PP QT C GC K +
Sbjct: 819 CEKTSPPSCIPASQYCLAPRECPPHQTICPELGGCINKTI 858
>SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08)
Length = 733
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 41 NGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMC 88
NGC V VR+ P E + +Q +L+ HV E H C
Sbjct: 638 NGCMVVKVRWYYHPEETKQGRRPGDVQNSLYRSTHVDENEIQTISHKC 685
>SB_38631| Best HMM Match : BAH (HMM E-Value=3.9e-10)
Length = 216
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 41 NGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMC 88
NGC V VR+ P E + +Q +L+ HV E H C
Sbjct: 121 NGCMVVKVRWYYHPEETKQGRRPGDVQNSLYRSTHVDENEIQTISHKC 168
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 74 DHVCMMESTGTGHMCFCEEDMC 95
DH C+ + GTG C C D C
Sbjct: 3263 DHCCIRDRGGTGDHC-CTRDRC 3283
>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 25.8 bits (54), Expect = 9.5
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 14 DSWSDPRCKDPFNYTALPRDQPPLQTCNGCCVKMVRYSKS--PYEVVRRTCT--SQLQIN 69
D D D F++ + P NG CV + K P E + C S+ N
Sbjct: 177 DDDDDDDDDDFFSFPVIDPCLPSPCRNNGTCVNIGASYKCNCPPEFYGKHCEALSKCTPN 236
Query: 70 LFMVDHVCMMESTGTGHMCFC 90
D C STG G +C+C
Sbjct: 237 PCKNDGTCRDISTGRGFVCYC 257
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 25.8 bits (54), Expect = 9.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 41 NGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAP 99
N CV++ S +P + TCT QL ++C S TG C D C AP
Sbjct: 875 NQGCVEIDECSSNPCQN-GGTCTDQLN------SYLCTCPSGYTGTKCEIVPDQCASAP 926
>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 23 DPFNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRR 60
DPF T L + QPPL +V+Y +S Y V R+
Sbjct: 528 DPF--TLLVKWQPPLYPNGNITKYLVQYQQSEYSVWRQ 563
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.328 0.136 0.487
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,325,461
Number of Sequences: 59808
Number of extensions: 154412
Number of successful extensions: 387
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 27
length of query: 119
length of database: 16,821,457
effective HSP length: 73
effective length of query: 46
effective length of database: 12,455,473
effective search space: 572951758
effective search space used: 572951758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)
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