Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001376-TA|BGIBMGA001376-PA|undefined
(119 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69884-9|CAI79224.1| 155|Caenorhabditis elegans Hypothetical pr... 36 0.010
Z50794-7|CAA90659.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.16
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 0.66
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 0.66
Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical pr... 28 2.0
AL022593-2|CAA18635.3| 928|Caenorhabditis elegans Hypothetical ... 28 2.0
AF125967-1|AAD14759.1| 271|Caenorhabditis elegans Hypothetical ... 27 3.5
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 27 4.6
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 27 4.6
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 27 4.6
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 27 4.6
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 27 4.6
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 27 4.6
AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical ... 27 4.6
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 26 6.1
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 26 6.1
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 26 8.1
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 26 8.1
>Z69884-9|CAI79224.1| 155|Caenorhabditis elegans Hypothetical
protein F31F6.8 protein.
Length = 155
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 20 RCKDPFNYTALPRDQPPLQTC-NGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCM 78
+C D F RD C NG C+KM+ KS V R+C + + D +
Sbjct: 59 KCIDYFEVDQALRDGVRSNECSNGVCMKMIFQEKSGINHVWRSCIPNAKEQI-RSDCTKI 117
Query: 79 MESTGTGHMCFCEEDMCN 96
G +C C+ ++CN
Sbjct: 118 TSGEGNLEVCTCDGNLCN 135
>Z50794-7|CAA90659.2| 388|Caenorhabditis elegans Hypothetical
protein F59F5.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.16
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 35 PPLQTC--NGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMCFCEE 92
PP + C N C K+ ++ +V++ C S + M+ T H CFC++
Sbjct: 33 PPNEQCSANACFAKVELFADESTAIVQKGCISDFPSGQRGCQYASNMD---TIH-CFCDQ 88
Query: 93 DMCN 96
D CN
Sbjct: 89 DQCN 92
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 37 LQTCNGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMCFCEEDMCN 96
L+ C G C K S S +V TC + C T CFCE+++CN
Sbjct: 42 LRECEGLCRKQTVKSPSG-GLVLLTCEENKLMAFINKGQDCSSSELETS--CFCEDELCN 98
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 37 LQTCNGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGTGHMCFCEEDMCN 96
L+ C G C K S S +V TC + C T CFCE+++CN
Sbjct: 42 LRECEGLCRKQTVKSPSG-GLVLLTCEENKLMAFINKGQDCSSSELETS--CFCEDELCN 98
>Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 15 SWSDPRCKDPFNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRRTCTSQ 65
S S PR N ++ P P Q +GCC R ++ V T +S+
Sbjct: 677 SCSSPRSSSKLNRSSYPSRNAPHQLEDGCCCAHARAPRAKSIAVPMTSSSR 727
>AL022593-2|CAA18635.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 15 SWSDPRCKDPFNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRRTCTSQ 65
S S PR N ++ P P Q +GCC R ++ V T +S+
Sbjct: 677 SCSSPRSSSKLNRSSYPSRNAPHQLEDGCCCAHARAPRAKSIAVPMTSSSR 727
>AF125967-1|AAD14759.1| 271|Caenorhabditis elegans Hypothetical
protein Y49G5B.1 protein.
Length = 271
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 77 CMMESTGTGHMCFCEEDMCN 96
C +E G G C C D CN
Sbjct: 78 CWLEPDGKGKHCMCFSDFCN 97
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 26.6 bits (56), Expect = 4.6
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 10 CYECDSWSDPRCKDPFNYTALPRDQPPL----QTC-NG--CCVKMVRYSKSPYEVVRRTC 62
C C WS C D F+ + PP+ C NG C V+ K P + R C
Sbjct: 544 CKAC--WSGCGCLDGFSRSTTGLYIPPMGCSSMLCANGTTCREDRVKCDKRPCPI-RALC 600
Query: 63 TSQLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
Q N C + G G +C ++C P R+
Sbjct: 601 LPNFQPN--GKPSFCEVAGCGAGEICHETIEICGEPPCRS 638
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 QLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
++ IN+ ++ HV +ST TGH+ + C G RT
Sbjct: 5 KVHINIVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 QLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
++ IN+ ++ HV +ST TGH+ + C G RT
Sbjct: 5 KVHINIVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 QLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
++ IN+ ++ HV +ST TGH+ + C G RT
Sbjct: 5 KVHINIVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 QLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
++ IN+ ++ HV +ST TGH+ + C G RT
Sbjct: 5 KVHINIVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 QLQINLFMVDHVCMMESTGTGHMCFCEEDMCNGAPART 102
++ IN+ ++ HV +ST TGH+ + C G RT
Sbjct: 5 KVHINIVVIGHVDSGKSTTTGHLIY----KCGGIDKRT 38
>AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical
protein F36H9.2 protein.
Length = 275
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 25 FNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRRTCTSQLQINLFMVDHVCMMESTGT 84
+N P + P ++ C G + Y + Y+++ R C IN+ + + G
Sbjct: 195 YNSNGKPGNIPGMKYCRG----HLCYVHTNYDIISRGC-----INVSDGGPEELKKKGGY 245
Query: 85 GHMCFCEEDMCNG 97
FC+ED+CNG
Sbjct: 246 LLYRFCDEDLCNG 258
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 16 WSDPRCKDPFNYTALPRDQPPLQT 39
W+ PRC D N T + R+ PL T
Sbjct: 229 WNTPRCSDDLNVT-ISRNGTPLTT 251
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 16 WSDPRCKDPFNYTALPRDQPPLQT 39
W+ PRC D N T + R+ PL T
Sbjct: 229 WNTPRCSDDLNVT-ISRNGTPLTT 251
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 19 PRCKDPFNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRRTCTSQ 65
P+C+ + + QP +Q C C + S S ++V+ C +Q
Sbjct: 351 PQCQQSCQQQCIQQQQP-MQQCAPACTQSCYQSCSTAQLVQMPCLTQ 396
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 19 PRCKDPFNYTALPRDQPPLQTCNGCCVKMVRYSKSPYEVVRRTCTSQ 65
P+C+ + + QP +Q C C + S S ++V+ C +Q
Sbjct: 352 PQCQQSCQQQCIQQQQP-MQQCAPACTQSCYQSCSTAQLVQMPCLTQ 397
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.328 0.136 0.487
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,169
Number of Sequences: 27539
Number of extensions: 112906
Number of successful extensions: 360
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 20
length of query: 119
length of database: 12,573,161
effective HSP length: 73
effective length of query: 46
effective length of database: 10,562,814
effective search space: 485889444
effective search space used: 485889444
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)
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