Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001375-TA|BGIBMGA001375-PA|IPR007087|Zinc finger,
C2H2-type
         (377 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    34   0.001
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    29   0.041
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    29   0.041
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    27   0.17 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    25   0.67 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 5   EKPFACTMPDCGMTFTNEDHLQLHTKKH 32
           E+PF C    CG  FT  D LQ H + H
Sbjct: 342 ERPFVCNWLFCGKRFTRSDELQRHLRTH 369



 Score = 30.7 bits (66), Expect = 0.018
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 5   EKPFACTMPDCGMTFTNEDHLQLHTKKHD 33
           EK FAC  P C   F   DHL  H K H+
Sbjct: 372 EKRFAC--PICNKRFMRSDHLAKHVKTHN 398



 Score = 26.2 bits (55), Expect = 0.39
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 9   ACTMPDCGMTFTNEDHLQLHTKKH 32
           +C +P CG  +    HL+ H + H
Sbjct: 316 SCHIPGCGKVYGKTSHLKAHLRWH 339


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
          protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 0.041
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 5  EKPFACTMPDCGMTFTNEDHLQLHTKKH 32
          EKPF C   +C   FT + HL+ H + H
Sbjct: 7  EKPFECQ--ECHKRFTRDHHLKTHMRLH 32


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 0.041
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 5   EKPFACTMPDCGMTFTNEDHLQLHTKKH 32
           EKPF C   +C   FT + HL+ H + H
Sbjct: 160 EKPFECQ--ECHKRFTRDHHLKTHMRLH 185


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 5   EKPFACTMPDCGMTFTNEDHLQLH 28
           E+P++C +  CG  F  +DHL+ H
Sbjct: 105 ERPYSCDI--CGKAFRRQDHLRDH 126


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 270 RQVRMKSVEDEPKVNAKEKLKRVLSEKSKTKSPTISNLVPISGGTLIPVTIVAA--QPQK 327
           +   ++ +++E  +N +  LKRV + K K  +P +  ++ + G T  P + VAA   P+K
Sbjct: 64  KDCNIQVLDEENDIN-QGGLKRVSALKEK--NPNLKVMLSVGGATASPDSFVAAANDPEK 120

Query: 328 I 328
           +
Sbjct: 121 M 121


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 96  IATISNTDDLHTPQMVFPLEHTDSTLFSTTNNQRNITISRSSSDES-GAIKEFETTTISK 154
           I+++ N D+         L   D ++  T N     T + S  DES G  +   T ++++
Sbjct: 477 ISSLLNLDNQQLELKPIDLNSGDLSMLETNNLSETFTQNLSLMDESEGRQEPNMTDSLTR 536

Query: 155 LTN 157
           L N
Sbjct: 537 LAN 539


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,465
Number of Sequences: 317
Number of extensions: 3496
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 377
length of database: 114,650
effective HSP length: 58
effective length of query: 319
effective length of database: 96,264
effective search space: 30708216
effective search space used: 30708216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)