Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001375-TA|BGIBMGA001375-PA|IPR007087|Zinc finger,
C2H2-type
(377 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30190.1 68414.m03690 expressed protein ; expression supporte... 34 0.14
At3g28770.1 68416.m03591 expressed protein 34 0.18
At2g24310.1 68415.m02906 expressed protein 34 0.18
At5g26160.1 68418.m03111 expressed protein 33 0.31
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 33 0.31
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 31 0.96
At5g40450.1 68418.m04905 expressed protein 31 1.3
At5g16880.2 68418.m01979 VHS domain-containing protein / GAT dom... 31 1.7
At5g16880.1 68418.m01978 VHS domain-containing protein / GAT dom... 31 1.7
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr... 31 1.7
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 30 2.2
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 30 2.2
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 29 3.9
At3g11560.3 68416.m01412 expressed protein 29 3.9
At3g11560.2 68416.m01411 expressed protein 29 3.9
At5g16880.3 68418.m01977 VHS domain-containing protein / GAT dom... 29 5.1
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 29 5.1
At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof... 29 5.1
At2g23710.1 68415.m02831 hypothetical protein contains Pfam prof... 29 5.1
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 29 5.1
At1g31163.1 68414.m03813 F-box family protein-related contains T... 29 5.1
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 29 5.1
At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containi... 29 6.7
At4g09370.1 68417.m01546 hypothetical protein contains Pfam prof... 29 6.7
At3g61630.1 68416.m06907 AP2 domain-containing transcription fac... 29 6.7
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 29 6.7
At1g23930.1 68414.m03019 hypothetical protein contains Pfam prof... 29 6.7
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 28 8.9
At5g33220.1 68418.m03924 hypothetical protein contains Pfam prof... 28 8.9
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi... 28 8.9
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 28 8.9
At3g17265.1 68416.m02207 F-box family protein 28 8.9
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain... 28 8.9
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 28 8.9
>At1g30190.1 68414.m03690 expressed protein ; expression supported
by MPSS
Length = 278
Score = 34.3 bits (75), Expect = 0.14
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 264 IRLPNGRQVRMKSVEDEPKV------NAKEKLKRVLSEKSKTKSPTISNLVPISGGTLIP 317
I+ P + R EDEP V + EK+ RV+SEK + + P++ TL
Sbjct: 118 IKNPKDVEFRNPEEEDEPMVKDIICVSPPEKIVRVVSEKKQRDDVAMEEYKPVTEQTLAS 177
Query: 318 VTIVAAQPQKIPIPPFRVARNYDKKAVKRKNLDTGNQCHSVSSEKQSD 365
+ P P+ +++ DK KR ++DT K+SD
Sbjct: 178 EEACNTRNHVNPNKPYGRSKS-DKPRRKRLSVDTETTKRKSYGRKKSD 224
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 33.9 bits (74), Expect = 0.18
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 12/175 (6%)
Query: 126 NNQRNITISRSSSDESGAIKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIK 185
N + + + + ES K ET KL++ +DN+ D + KD
Sbjct: 778 NKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKD---- 833
Query: 186 DSISYSNNIIKIHSEIRRDDMNKNPIQTFEDTTKNNKITDVPPIMSQTSIDYVVETLTND 245
Y + K +E D N + +D K+++ +V ++ E ND
Sbjct: 834 ----YQSVEAKEKNENGGVDTNVGNKEDSKDL-KDDRSVEVKANKEESMKKKREEVQRND 888
Query: 246 LCNDTANKHDESDNIEVLIRLPNGRQVRMKSVEDEPKVNAKEKLKRVLSEKSKTK 300
+ T D ++N+++ ++ +G V+ K +DE K KE+ K ++ SK K
Sbjct: 889 K-SSTKEVRDFANNMDIDVQKGSGESVKYK--KDEKKEGNKEENKDTINTSSKQK 940
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 33.9 bits (74), Expect = 0.18
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 82 RAMETKQHILSLESIATISNTDDLHTPQMVFPLEHTDSTLFSTTNNQRNITISR---SSS 138
R ETK H S +S+ S+ + + P +H DS T R + + + S+S
Sbjct: 200 RVFETKCHSDSGDSVPLSSSPPSVAADDVRVPAKHLDSDSSPPTAIGRTMVLVKQRISAS 259
Query: 139 DESGAIKEFETTTISKLTN--EVTTISRIVE 167
D S + E T +SK N EV I+E
Sbjct: 260 DNSASSSASEGTKVSKTENSGEVLPFKEIIE 290
>At5g26160.1 68418.m03111 expressed protein
Length = 1058
Score = 33.1 bits (72), Expect = 0.31
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 7/183 (3%)
Query: 36 LQLGLEQKAAFVADQT--PTPTRFIRNCEEVGLFQDLQNDNPFDEGFKRAMETKQHILSL 93
L L L Q F+ ++ P R E+GL D Q + D G + +ET Q S
Sbjct: 273 LSLNLSQSIDFLYEKLGEQNPQRSTGTEVELGLETDKQAADSDDSG--KGVETFQQERSG 330
Query: 94 ESIATISNTDD--LHTPQMVFPLEHTDSTLFSTTNNQRNITISRSSSDESGAIKEFETTT 151
+ NT+ + + L+ D ++F T ++++ S+ S + +
Sbjct: 331 LEESNDPNTESSRIEIIDVHEILKDEDESVFEETYFIDQLSVAALKSEPSNLLPKHSVDG 390
Query: 152 ISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNIIKIHSEIRRDDMNKNPI 211
K T IS E + +DDS K+ ++ SY I + S + DD+ ++
Sbjct: 391 TPKSTFSSQVISESSESKSPSAMDDSTEKENFLEVKSSYKAAKISMTS-LSLDDITESVA 449
Query: 212 QTF 214
F
Sbjct: 450 NDF 452
>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 538
Score = 33.1 bits (72), Expect = 0.31
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 164 RIVEKHDDNRVDDSKLKD--EVIKDS---ISYSNNIIKIHSEIRRDDMNKNPIQTFEDTT 218
R VE + N + S E+ +DS + + ++K EIR + + P+ +F+
Sbjct: 331 REVEDDERNHISSSIESSPIEMTRDSNTKLKFEKQVVK--REIREHEELETPLVSFQ-VN 387
Query: 219 KNNKITDVPPIMSQTSIDYVVETLTNDLCNDTANKHDESDNIEVL-IRLPNGRQVRMKSV 277
K+ + + + S + V ETL ND + + DN+E L L + + R+ +
Sbjct: 388 KSEEAAAETHLDDEQSEEAVAETLLNDELDGDDEEEVAEDNLEPLNSSLSSSEENRVDRI 447
Query: 278 ED-EPKVNAKEKL 289
E K+ KEKL
Sbjct: 448 RRLEQKLLGKEKL 460
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 31.5 bits (68), Expect = 0.96
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 5 EKPFACTMPDCGMTF----TNEDHLQLHTKKHDMMLQL-GLEQKAAFVAD 49
E+PF C+ C MTF +HL+LHT + + ++ G FV+D
Sbjct: 1265 ERPFECSWKGCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSD 1314
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 31.1 bits (67), Expect = 1.3
Identities = 48/253 (18%), Positives = 107/253 (42%), Gaps = 14/253 (5%)
Query: 62 EEVGLFQDLQNDNPFDEGFKRAMETKQHILSLE-SIATISNTDDLHTPQMVFPLEHTDST 120
E +GL + D+ ET++ +++ S+ + + + + P++ P E ++ T
Sbjct: 819 EPIGLDSNGAEAEQIDQNITN--ETEEILVAKPVSLLDVKSVEQMQKPKLESPSEVSEET 876
Query: 121 LFSTTNNQRNITISRSSSDESGAIKEFETTTISKLTNEVTTIS--RIVEKHDDNRVDDSK 178
S T +++ I +E +E + L + T+S +E + + + S
Sbjct: 877 --SKTVDEK---IEEKPEEEVTLYQEGQVDGSYGLETKEETVSVPESIELEEQPQEERSV 931
Query: 179 LKDEVI-KDSISYSNNIIKIHSEIRRDDMNK--NPIQTFEDTTKNNKITDVPPIMSQTSI 235
+ + K ++ + +++ S+ + + + + I+ E + +TD+ P+ ++S
Sbjct: 932 IDPTPLQKPTLESPSEVLEESSKTVDEKIEEKTDSIELGEIAQEERSVTDLTPLQEESSQ 991
Query: 236 DYVVETLTNDLCNDTANKHDESDN-IEVLIRLPNGRQVRMKSVEDEPKVNAKEKLKRVLS 294
E T ++ N+ +SD IEVL P+ VE E N KE + +
Sbjct: 992 PNEQEKETKLEKHEPTNEEVKSDEVIEVLSASPSKELEGETVVEAENIENIKENEEEQAA 1051
Query: 295 EKSKTKSPTISNL 307
EK + T+ +
Sbjct: 1052 EKIQKSLETVQTV 1064
>At5g16880.2 68418.m01979 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 108 PQMVFPLEHTDSTLFSTTNNQRNITISRSSSDESGAIKEFETTT-ISKLTNEVTTISRIV 166
P F E T N+ ++ SSS + A+++ TTT + + TT+ RI+
Sbjct: 224 PVRSFTAEQTKEAFDIARNSIELLSTVLSSSPQHDALQDDLTTTLVQQCRQSQTTVQRII 283
Query: 167 EKHDDNRV---DDSKLKDEVIKDSISY 190
E +N + + DE++K Y
Sbjct: 284 ETAGENEALLFEALNVNDELVKTLSKY 310
>At5g16880.1 68418.m01978 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 108 PQMVFPLEHTDSTLFSTTNNQRNITISRSSSDESGAIKEFETTT-ISKLTNEVTTISRIV 166
P F E T N+ ++ SSS + A+++ TTT + + TT+ RI+
Sbjct: 224 PVRSFTAEQTKEAFDIARNSIELLSTVLSSSPQHDALQDDLTTTLVQQCRQSQTTVQRII 283
Query: 167 EKHDDNRV---DDSKLKDEVIKDSISY 190
E +N + + DE++K Y
Sbjct: 284 ETAGENEALLFEALNVNDELVKTLSKY 310
>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
protein, Homo sapiens, PIR:JN0717
Length = 405
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 134 SRSSSDESGAIKEFETTT--ISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYS 191
SR+ D S A+K FE + + KL I+ + N++ D K DE ++ + SY
Sbjct: 257 SRAMGDSSSAVKHFEESVEFLMKLPLNDLEITHTLSV-SLNKIGDLKYYDEDLQAARSYY 315
Query: 192 NNIIKIHSEIRRDDMNKNPIQTFEDTTKNNKITDV 226
+ + + + + N P Q + K+ D+
Sbjct: 316 DRALNVRRDAMKHHPNA-PSQILDVAVSLAKVADI 349
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 5 EKPFACTMPDCGMTFTNEDHLQLHTKKH 32
E+ F C + DC ++ +DHL H H
Sbjct: 91 ERSFTCYVDDCAASYRRKDHLNRHLLTH 118
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 5 EKPFACTMPDCGMTFTNEDHLQLHTKKH 32
E+ F C + DC ++ +DHL H H
Sbjct: 3 ERSFTCYVDDCAASYRRKDHLNRHLLTH 30
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 6 KPFACTMPDCGMTFTNEDHLQLHTKK 31
+P+ C PDCG TF H +K
Sbjct: 1318 RPYVCAEPDCGQTFRFVSDFSRHKRK 1343
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/98 (22%), Positives = 44/98 (44%)
Query: 148 ETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNIIKIHSEIRRDDMN 207
E + L NE+ + + V++ D VD+ +L E S S + ++ + + + + M
Sbjct: 687 EISRFEILRNELIELEKRVKRSTDQSVDEEELISEDTPQSSSRTESVQLVQTPKKENMME 746
Query: 208 KNPIQTFEDTTKNNKITDVPPIMSQTSIDYVVETLTND 245
K + E TT + T + I S ++ + +L D
Sbjct: 747 KTLQKLREATTDVWQGTQLLAIDSAAAVQLLRRSLIGD 784
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/98 (22%), Positives = 44/98 (44%)
Query: 148 ETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNIIKIHSEIRRDDMN 207
E + L NE+ + + V++ D VD+ +L E S S + ++ + + + + M
Sbjct: 687 EISRFEILRNELIELEKRVKRSTDQSVDEEELISEDTPQSSSRTESVQLVQTPKKENMME 746
Query: 208 KNPIQTFEDTTKNNKITDVPPIMSQTSIDYVVETLTND 245
K + E TT + T + I S ++ + +L D
Sbjct: 747 KTLQKLREATTDVWQGTQLLAIDSAAAVQLLRRSLIGD 784
>At5g16880.3 68418.m01977 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 297
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 108 PQMVFPLEHTDSTLFSTTNNQRNITISRSSSDESGAIKEFETTT-ISKLTNEVTTISRIV 166
P F E T N+ ++ SSS + A+++ TTT + + TT+ RI+
Sbjct: 224 PVRSFTAEQTKEAFDIARNSIELLSTVLSSSPQHDALQDDLTTTLVQQCRQSQTTVQRII 283
Query: 167 EKHDDNRVDDSKL 179
E D+ + + L
Sbjct: 284 ETADEQTLCTANL 296
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 259 NIEVLIRLPNGRQVRMKSVEDEPKVNAKEKLKRVLSEKSKTKS 301
N EVL++ + ++++ K+ ED +EK +RVL E S S
Sbjct: 547 NTEVLVKCSSSKELKTKAGED--NTEEREKKRRVLGEMSNQLS 587
>At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 664
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 144 IKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNII 195
+K F I++ ++T IS I+E D R S++ ++ + D I Y + I+
Sbjct: 411 MKGFSLEEINEALGDITDISSILEPDMDERKMLSRVVEKHVDDGIGYIDPIV 462
>At2g23710.1 68415.m02831 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287;
this may be a pseudogene; the protein appears slightly
truncated on the 3' end due to intervening stop codon.
Length = 592
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 144 IKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNIIKIHSE--- 200
+K F I++ ++T IS I+E D R S++ ++ + D I Y + I+ E
Sbjct: 411 MKGFTLEEINEALGDITDISSILEPDMDERKMLSRVVEKHVDDGIGYIDPIVDSWRERLI 470
Query: 201 -IRRDDMNKNPIQTFEDTTKNNKITDVPPI 229
++ ++ Q D T+ + DVP +
Sbjct: 471 VEKKKIFWRSLYQADIDGTRIETVDDVPAV 500
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 29 TKKHDMMLQLGLEQKAAFVADQTPTPTRFIRNCEEVGL--FQDLQNDNPFDEGFKRAMET 86
TK++ M + E+ A + EE+ + + L N +PF GF+ +
Sbjct: 199 TKENIMRWRQAFEEVATIAGYDSRNWENEAAMIEEIAIEISKRLINSSPFS-GFEGLIGM 257
Query: 87 KQHILSLESIATISNTDDLHTPQMVFPLEHTDSTLFSTTNNQ 128
K HI ++ + + +TD+ T + P ST+ +NQ
Sbjct: 258 KAHIEKMKQLLCLDSTDERRTVGISGPSGIGKSTIARVLHNQ 299
>At1g31163.1 68414.m03813 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 191
Score = 29.1 bits (62), Expect = 5.1
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 188 ISYSNNIIKIHSEIRRDD--MNKNPIQTFEDTTKNNKITDVPPIMSQTSIDYVVETLTND 245
I+Y + +I+ E RD K ++ ED K DV + S+ + + + N
Sbjct: 67 INYKGKLCEIYVEYARDVGFPLKLIMRVLEDVDKQEWSKDVYSLYSERKFGHDLSAIGNR 126
Query: 246 LCNDTANKHDESDNIEVLIR---LPNGRQVRMKSVEDEPKVNAKEKLKRVLSEKSKTKSP 302
+C D S NI + I+ L R + K + + + + L + + +T S
Sbjct: 127 ICTFLDYVEDISVNIAMQIKSSPLQQSRNIVTKKPKPQQRPHTSRDLCKSCAVCEETSSI 186
Query: 303 TISN 306
T N
Sbjct: 187 TSMN 190
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 29.1 bits (62), Expect = 5.1
Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 154 KLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISY--SNNIIKIHSEIRRDDMNKNPI 211
+L V+++ +++ + + SK+ +E IKD + + IIK+ +E + K +
Sbjct: 1005 QLKESVSSLQNKIDESERKYEEISKISEERIKDEVPVIDQSAIIKLETE---NQKLKALV 1061
Query: 212 QTFEDTTKNNKITDVPPIMSQTSIDYVVETLTNDLCND---TANKHDESDNIEVLIRLPN 268
+ E+ KI ++ +TS + + E L D+ D +N E++ ++ L+
Sbjct: 1062 SSMEE-----KIDELDRKHDETSPN-ITEKLKEDVSFDYEIVSNLEAENERLKALV---- 1111
Query: 269 GRQVRMKSVEDEPKVNAKEKLKRVLSEKSKTKSPTISN 306
G + + + +E+ K +L E+S T+ +I N
Sbjct: 1112 GSLEKKINESGNNSTDEQEEGKYILKEESLTEDASIDN 1149
>At4g21880.1 68417.m03164 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 845
Score = 28.7 bits (61), Expect = 6.7
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 172 NRVDDSKLKDEVIKDSISYSNNIIKIHSEIRRDDMNKNPIQTFEDTTKNNKITDVPPIMS 231
N+VDDS L +++D + +N+I ++ + ++ I F K ++ D+ P S
Sbjct: 276 NKVDDSGLSLSILQDGVETVSNLIFSYATCIPNSTVEDAIFKF---NKLHEELDIVP--S 330
Query: 232 QTSIDYVVETLTNDLCNDTANKHDESDNI--EVLIRLPNGRQVRMKSVEDEPKVNAKEKL 289
TS + +V L N+ D +N+ L+ N ++++E + N +++
Sbjct: 331 STSYENLVSYLCGS--NEVVTALDIVENMCEAGLVISANILHSLLQAIEQILEFNLVQRI 388
Query: 290 KRVLSEKS-KTKSPT 303
++S KS K S T
Sbjct: 389 YSIMSNKSVKPNSET 403
>At4g09370.1 68417.m01546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 666
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 144 IKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNII 195
+K F I++ ++T IS I+E D R S++ ++ + D I Y + I+
Sbjct: 411 MKGFTLEEINEALGDITDISSILEPDMDERKMLSRVVEKHVDDGIGYIDPIV 462
>At3g61630.1 68416.m06907 AP2 domain-containing transcription
factor, putative transcription factor Pti6 -
Lycopersicon esculentum, PIR:T07728
Length = 315
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 218 TKNNKITDVPPIMSQTSIDYVVETLTNDLCNDTANKHDESDNIEVLIRL 266
T+N +T+V S S V T+T+ D+++ D+++N+ V+ R+
Sbjct: 11 TENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRV 59
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 284 NAKEK-LKRVLSEKSKTKSPTISNLVPISGGTLIPVTIVAAQPQKIPI 330
NAK K LK V+ + K P +S+ V I G + V V PQ + I
Sbjct: 29 NAKHKFLKEVIRVEEFLKDPAVSSNVFIGGTVQVRVPKVVPAPQTVSI 76
>At1g23930.1 68414.m03019 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 649
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 144 IKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNII 195
+K F I++ ++T IS I+E D R S++ ++ + D I Y + I+
Sbjct: 392 MKGFTLEEINEALGDITDISSILEPDMDERKMLSRVVEKHVDDGIGYIDPIV 443
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 28.3 bits (60), Expect = 8.9
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 139 DESGAIKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNIIKIH 198
D+S A++ + T + ++ + S + E+ D + V+D D + D S S
Sbjct: 412 DDSDAVEYY--TACESMADDTASDS-VAERDDSDAVEDDTAIDSMADDPASDS----VAE 464
Query: 199 SEIRRDDMNKNPIQTFEDTTKNNKITDVPPIMSQTSIDYVVETLTNDLCNDTANKHDESD 258
S+ N I + D T +N + + S + +T + +C+DTAN SD
Sbjct: 465 SDDGDAVENDTAIDSMADDTVSNSMAE-----SDDGDNVEDDTAIDSMCDDTANDDVGSD 519
Query: 259 N 259
+
Sbjct: 520 D 520
>At5g33220.1 68418.m03924 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 587
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 144 IKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNII 195
+K F I++ ++T IS I+E D R S++ ++ + D I Y + I+
Sbjct: 440 MKGFTLEEINEAFGDITDISSILEPDMDERKMLSRVVEKHVDDGIGYIDPIV 491
>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1030
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 119 STLFSTTNNQRNITISRSSSDESGAIKEFETTTISKLTNEVTTISRI 165
S LF T + + S S + K ETTT SK+ E T I+ +
Sbjct: 9 SCLFDPTRRRNQLVSFSGFSKSSKSNKTRETTTTSKIQAEATAITSL 55
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 201 IRRDDMNKNPIQTFEDTTKNNKITDVPPI-MSQTSIDYVVETLTNDLCNDTANKHD 255
++RD + K F + N TD + +S+ SI++ + L NDL T++K D
Sbjct: 739 LQRDSVEKIIGWAFGNHISKNPDTDPAKVTLSRESIEFGIGLLQNDLKGSTSSKKD 794
>At3g17265.1 68416.m02207 F-box family protein
Length = 345
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 122 FSTTNNQRNITISRSS--SDESGAIKEFETTTISKLTNEVTTISRIVEKHDDNRVDDSKL 179
F T++ + NI ++++ +D+ + F K+T +S +V++ + V SK+
Sbjct: 243 FDTSSIKMNIWVTKTKIDADKDLSWSNFLVVDFGKVTLTSEPLSFLVDEENKMVVCSSKI 302
Query: 180 KDEVIKDSISYSNNIIKIHSEI 201
+ K I ++ I++H EI
Sbjct: 303 RHIERKTIIYFAKEGIQVHQEI 324
>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein contains Pfam
profile PF00917: MATH domain
Length = 898
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 155 LTNEVTTISRIVEKHDDNRVDDSKLKDEVIK 185
L+++VT++ RI E+H D +D + K++V+K
Sbjct: 657 LSSQVTSVKRIFEEHPD-IAEDFRSKNQVVK 686
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 155 LTNEVTTISRIVEKHDDNRVDDSKLKDEVIKDSISYSNNIIKIHSEIRRDDMNKNPIQTF 214
+ EV+ +SR+ R + +D+V++ +S + I+ +E + + + TF
Sbjct: 866 IPEEVSILSRVPINISTRRAYSVRKEDDVVEAGVSKTEAIVAPVNEKEKKSVRRR--VTF 923
Query: 215 EDTTKNNKITD 225
D TKN+ D
Sbjct: 924 SDDTKNDDKKD 934
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.128 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,049
Number of Sequences: 28952
Number of extensions: 384927
Number of successful extensions: 1129
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 56
length of query: 377
length of database: 12,070,560
effective HSP length: 82
effective length of query: 295
effective length of database: 9,696,496
effective search space: 2860466320
effective search space used: 2860466320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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