Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001374-TA|BGIBMGA001374-PA|undefined
         (295 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   1.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.7  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 270 EKYTSYFSNNVKNLSNF 286
           +KYT+YF N   +L NF
Sbjct: 344 DKYTTYFLNTYPHLFNF 360


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 105 ARLRCVVEVNGERIVQTRGQPGELFPDKYMSS 136
           AR       +G + VQT  +PG+  P+K  S+
Sbjct: 413 ARPPSTPSADGSKPVQTTPKPGQWVPEKSTST 444


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 250 RTNREHNYQSHPVKINGYTPEKY 272
           RT+R+H  Q + +  N Y  E Y
Sbjct: 295 RTDRKHTQQHYQMNQNMYPGEMY 317


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 250 RTNREHNYQSHPVKINGYTPEKY 272
           RT+R+H  Q + +  N Y  E Y
Sbjct: 243 RTDRKHTQQHYQMNQNMYPGEMY 265


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 250 RTNREHNYQSHPVKINGYTPEKY 272
           RT+R+H  Q + +  N Y  E Y
Sbjct: 426 RTDRKHTQQHYQMNQNMYPGEMY 448


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,410
Number of Sequences: 317
Number of extensions: 3365
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 295
length of database: 114,650
effective HSP length: 56
effective length of query: 239
effective length of database: 96,898
effective search space: 23158622
effective search space used: 23158622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)