Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001374-TA|BGIBMGA001374-PA|undefined
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    29   0.80 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.4  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    27   4.2  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   7.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 192 QQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRT 251
           ++ PVG     +A+   + S G  D +D  SR+         Q   + + + +Y   D  
Sbjct: 8   RRRPVGIADFDEANDEAYESVGFHDYADYFSRK---------QRKLQNQNAALYKSIDED 58

Query: 252 NREHNYQSHPVKINGYTPEKYTSYFSNNVKNLSNF 286
           ++   +    + INGYT   YT      V N   F
Sbjct: 59  SKSDLFHGLAIAINGYTKPSYTELRQMIVSNGGTF 93


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 48  PWQEWSDHYTCHRYRCEIRDG 68
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 158 NKNYEHTYAVFNSSRPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSR-GAAD 216
           NK+ EH  A   +S     + NE N  V   S    T   G     + P   NS  G   
Sbjct: 81  NKDEEHQTADLLASNEGNEKNNEENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTT 140

Query: 217 GSDISSRRF-IDYPAPQMQDSP---RRKRSTVYPLFDRTNREHN 256
            S   S R  I    P+   SP   R++R +V      T R  N
Sbjct: 141 RSGRQSPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKN 184


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 228 YPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHP--------VKINGYTPEKYTSYFSN- 278
           Y    M   P +  S  YP FD+ +    Y S P        V  N + P  Y  Y  N 
Sbjct: 106 YAPKSMNPPPEQLDSPCYPHFDQDSSSVIYPSPPSTYYPNMYVSANTFIPMPYAHYTDNM 165

Query: 279 -NVK--NLSNFNPR 289
            + K  N  NF PR
Sbjct: 166 YHAKPVNRPNFLPR 179


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 76   GCRKPKIPENALECHEYIEDEN 97
            G  K  IP+N  EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 198 GEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNY 257
           G P     P  FNS             +++ PAP+ Q S   +      +   T     +
Sbjct: 836 GHPLPSPPPADFNSLNV---DFYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATF 892

Query: 258 QSHPVKINGYTP 269
           Q HP   N  TP
Sbjct: 893 QGHPTISNVATP 904


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,340
Number of Sequences: 5004
Number of extensions: 60184
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 7
length of query: 295
length of database: 2,362,478
effective HSP length: 72
effective length of query: 223
effective length of database: 2,002,190
effective search space: 446488370
effective search space used: 446488370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)