Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001374-TA|BGIBMGA001374-PA|undefined
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36991| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  29   4.5  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      29   6.0  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    29   6.0  
SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)              29   6.0  
SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034)                   28   7.9  

>SB_36991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 253 REHNYQSHPVKINGYTPEKYTSYFSNNVKNLSNFNPRL 290
           RE+N  S P++I G      T+ F  N  NLSN N ++
Sbjct: 48  RENNRLSGPMRIGGIRKVNDTASFYTNFVNLSNLNQKI 85


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 158 NKNYEHTYAVFNSSRPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADG 217
           N N  H     N + P  G+++ PNP + G       P  G       P   NSR +   
Sbjct: 287 NPNPPHNGRKSNPNPPLNGRKSNPNPPLNGRKSNPNPPHNGRKSNPNPP--HNSRKSNPN 344

Query: 218 SDISSRRFIDYP---APQMQDSPRRKRSTVYP 246
             ++ R+    P    P++   P  +   V+P
Sbjct: 345 PPLNGRKSNPNPPHNGPKVHPQPSPQWPKVHP 376


>SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 69  KYFIAAVGCRKPKIPENALECHEYIEDENVEFPTCCARLRC 109
           K ++ A   +KP +P++    HE +    +    C  R RC
Sbjct: 22  KTYLIACLAQKPGVPQDTRHSHEPLPQRKISLIVCSTRTRC 62


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 216  DGSDISSRRFIDYPAPQMQ--DSPRRKRSTVYPLFDR-------TNREHNYQSHPVKING 266
            DG D  S + +  P P MQ  D P      V P++DR       TN E   +  P   N 
Sbjct: 1135 DGDDTDSTQ-LPNPPPDMQLPDPPPPITINVPPMYDRPCTIADLTNEESVDEKSPTHTNA 1193

Query: 267  YTPEKYTSYFSNN 279
            Y+   ++S  S+N
Sbjct: 1194 YSESGWSSSSSSN 1206


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 182  NPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRK- 240
            +P+VVG+SG+ Q   GG  + + S  I + R    G   +S+  +  P+    D+   K 
Sbjct: 927  DPSVVGVSGVSQKRFGGFIRKRIS--IEDERDEFSGK-TTSKCHLPKPSDCFVDTLETKQ 983

Query: 241  ----RSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNNVK 281
                +   YP      +   Y S  +K +G+  +   S F  +VK
Sbjct: 984  IYEAKDDSYPCRTGKKKIDKYPSSHIKFSGHLSKPAPSSFDISVK 1028


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 81  KIPENALECHEYIEDENVEFPT 102
           ++ E+ LEC EYI ++N EF T
Sbjct: 513 EMSESILECFEYIPEKNTEFMT 534


>SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)
          Length = 436

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/63 (26%), Positives = 24/63 (38%)

Query: 200 PQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQS 259
           PQ   SPG     G  DG+   +  +  Y +P    S  R RS    L  +  +E     
Sbjct: 342 PQTPKSPGAGRHSGGDDGASTQTGMYQSYVSPMKTISEVRSRSDQIDLETQRGKESKASI 401

Query: 260 HPV 262
            P+
Sbjct: 402 KPI 404


>SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034)
          Length = 351

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 57 TCHRYRCEIRDGKYFIAAVGCRKPKIPENALECHEYIED 95
          T  R RCEI + +YF A    R     EN  +  E + D
Sbjct: 42 TVRRLRCEIENERYFTARPAKRLKMSHENKADIEEKVPD 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,701,187
Number of Sequences: 59808
Number of extensions: 461302
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 16,821,457
effective HSP length: 82
effective length of query: 213
effective length of database: 11,917,201
effective search space: 2538363813
effective search space used: 2538363813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)