Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001374-TA|BGIBMGA001374-PA|undefined
(295 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05100.1 68418.m00541 expressed protein 31 0.70
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 31 0.70
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 30 1.6
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 30 1.6
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 30 1.6
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 30 1.6
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 30 2.1
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 29 3.7
At5g23300.1 68418.m02726 dihydroorotate dehydrogenase, mitochond... 29 4.9
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 29 4.9
At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family prote... 29 4.9
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 6.5
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 6.5
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 28 6.5
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 28 8.6
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 28 8.6
>At5g05100.1 68418.m00541 expressed protein
Length = 324
Score = 31.5 bits (68), Expect = 0.70
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 172 RPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAP 231
RP +G + + V + ++ E +A IFNS ++D D SS R P P
Sbjct: 126 RPNRGAGGSGSGSGVEKNLLRSVEERKEEYDKARARIFNSPSSSDSED-SSTRAPPPPYP 184
Query: 232 QMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKI 264
++ DS K +T P + T NY S+PV +
Sbjct: 185 RL-DS---KHNTACPSRNETEVVVNYNSNPVDV 213
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFI 72
Q CV + + + +PW W D+ T RC +++ KY I
Sbjct: 284 QLCVHRVANESSRPWVWW-DYVTDFHSRCSMKEKKYSI 320
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
Q CV K + + +PW W D+ T + RC +++ KY
Sbjct: 286 QLCVYKVANETGKPWVWW-DYVTDFQIRCPMKEKKY 320
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
Q CV K +++ + W W D+ T RC +++ KY
Sbjct: 283 QLCVHKVAKENNRSWVWW-DYVTDFHIRCSMKEKKY 317
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
QAC + + + +PW W D+ T RC +++ KY
Sbjct: 285 QACFFRVTNESGKPWLWW-DYVTDFAIRCPMKEEKY 319
>At5g23300.1 68418.m02726 dihydroorotate dehydrogenase,
mitochondrial / dihydroorotate oxidase / DHOdehase
(PYRD) nearly identical to SP|P32746 Dihydroorotate
dehydrogenase, mitochondrial precursor (EC 1.3.3.1)
(Dihydroorotate oxidase) (DHOdehase) {Arabidopsis
thaliana}; identical to cDNA pyrD mRNA for
dihydroorotate dehydrogenase GI:16448
Length = 460
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 156 LYNKNYEHTYAVFNSSRPWKGQQNEPNPAVVGM 188
L + + H AV ++R W ++ P+PA++G+
Sbjct: 94 LLDAEFAHKLAVSAAARGWVPREKRPDPAILGL 126
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
QACV + +PW W D+ T RC +++ KY
Sbjct: 281 QACVYRVMNDTGKPWVWW-DYVTDFAIRCPMKEKKY 315
>At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family protein
similar to GB:AAC99312 from [Arabidopsis thaliana]
(Plant J. (1999) In press)
Length = 478
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 ALFMLCCLVLPALSAEDVSYQACVDKYSRKGY 46
A+F L CLV A D S+ ACV K G+
Sbjct: 236 AMFKLRCLVRTHHGARDDSFNACVQKEDELGH 267
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 165 YAVFNSSRPWKGQQNEPNPAVVGMS---GIQQTPVGGEPQGQASPGIFNSRGAADGS 218
+ V P G Q P P V + G Q P EPQ PG+ GAA S
Sbjct: 626 HPVHGQHMPPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPPGVQADSGAATSS 682
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 165 YAVFNSSRPWKGQQNEPNPAVVGMS---GIQQTPVGGEPQGQASPGIFNSRGAADGS 218
+ V P G Q P P V + G Q P EPQ PG+ GAA S
Sbjct: 626 HPVHGQHMPPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPPGVQADSGAATSS 682
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 35 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 70
Q CV K +++ W W D+ T RC +++ KY
Sbjct: 282 QLCVHKVAKEKNTSWVWW-DYVTDFNIRCSMKEKKY 316
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 157 YNKNYEHTYAVFNSSRPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAAD 216
+ +++ A F S PW G G +G Q P GG G S G+F S D
Sbjct: 157 HKRSFSANDACFESEEPWFG----------GGNGCHQFPQGGLVDGFGSSGVFGSPSEMD 206
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 157 YNKNYEHTYAVFNSSRPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAAD 216
+ +++ A F S PW G G +G Q P GG G S G+F S D
Sbjct: 157 HKRSFSANDACFESEEPWFG----------GGNGCHQFPQGGLVDGFGSSGVFGSPSEMD 206
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,318,459
Number of Sequences: 28952
Number of extensions: 313551
Number of successful extensions: 655
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 16
length of query: 295
length of database: 12,070,560
effective HSP length: 81
effective length of query: 214
effective length of database: 9,725,448
effective search space: 2081245872
effective search space used: 2081245872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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