GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001374-TA|BGIBMGA001374-PA|undefined
         (295 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55A46 Cluster: RNA-binding region-containing protein; ...    39   0.13 
UniRef50_Q29DX2 Cluster: GA12782-PA; n=1; Drosophila pseudoobscu...    39   0.18 
UniRef50_Q5BIB7 Cluster: RE17110p; n=2; Drosophila melanogaster|...    37   0.54 
UniRef50_UPI00006CC456 Cluster: hypothetical protein TTHERM_0013...    36   1.2  
UniRef50_Q3WG62 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_Q1E3L9 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_Q822Y4 Cluster: Probable O-sialoglycoprotein endopeptid...    36   1.6  
UniRef50_Q17HB5 Cluster: Homeobox protein otx; n=1; Aedes aegypt...    35   2.9  
UniRef50_Q8IAW3 Cluster: Putative uncharacterized protein PF08_0...    34   3.8  
UniRef50_Q54X23 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_O86525 Cluster: Putative membrane protein SC1C2.25c; n=...    34   5.0  
UniRef50_Q8IIS1 Cluster: Putative uncharacterized protein; n=2; ...    33   6.6  

>UniRef50_Q55A46 Cluster: RNA-binding region-containing protein;
           n=3; Dictyostelium discoideum|Rep: RNA-binding
           region-containing protein - Dictyostelium discoideum AX4
          Length = 469

 Score = 39.1 bits (87), Expect = 0.13
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 184 AVVGMSGIQQTPVGGEPQ--GQASPG--IFNSRGAADGSDISSRRFIDYPAPQMQDSPRR 239
           A+ GM+G     V G P   GQ+S G  I+++ GA+  S  +     +Y  P +  +P +
Sbjct: 298 AIAGMNG---GLVDGNPVKVGQSSAGSKIYSNGGASGPSRRNINFNNNYNLP-INPNPYQ 353

Query: 240 KRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNNVKNLSNFNPRLSLNLS 295
           +  +  P     N  +N  ++ +  N  T   Y +Y SNNV N   F+P  S++ S
Sbjct: 354 QAPSSLPYNYNNNNNNNNYNNNIN-NNNTSSSYNNYNSNNVNNSIQFSPTTSISNS 408


>UniRef50_Q29DX2 Cluster: GA12782-PA; n=1; Drosophila
           pseudoobscura|Rep: GA12782-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 85

 Score = 38.7 bits (86), Expect = 0.18
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 37  CVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAVGCRKPKIPENALECHEYIEDE 96
           C DK++R+   P +E+     C    C +   +  I    C   + P     C E   D 
Sbjct: 6   CFDKFTRRAMLPDKEYKPKGICASMTCSLEAREISIET--CPYVEAPG----CEELPADV 59

Query: 97  NVEFPTCCARLRCVVEVNGERIV 119
           N  FP CC + +CV    G+  V
Sbjct: 60  NWSFPKCCPQFKCVDFKTGKEFV 82


>UniRef50_Q5BIB7 Cluster: RE17110p; n=2; Drosophila
           melanogaster|Rep: RE17110p - Drosophila melanogaster
           (Fruit fly)
          Length = 118

 Score = 37.1 bits (82), Expect = 0.54
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 37  CVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAVGCRKPKIPENALECHEYIEDE 96
           C DK +RK   P +E+     C    C +   +  I    C   + P     C E   D 
Sbjct: 39  CFDKLTRKALLPDKEYKPKGICAAMTCSLEALEISIET--CPYVEAPG----CEELPSDP 92

Query: 97  NVEFPTCCARLRCV 110
           N  FP CC + +CV
Sbjct: 93  NWRFPKCCPQFKCV 106


>UniRef50_UPI00006CC456 Cluster: hypothetical protein
           TTHERM_00136430; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00136430 - Tetrahymena
           thermophila SB210
          Length = 1277

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 160 NYEHTYAVFNSSRPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSD 219
           NY    A  NSS  ++G QN      +G +G          Q Q++      RG+ + S 
Sbjct: 703 NYRTNQAGNNSSTNYQGGQN-----YLGTNGQNNASSSSSQQNQSNQTNQQQRGSQNISS 757

Query: 220 ISSRRFIDYPAPQMQDSPRRKRSTVYPLF-DRTNREHNYQSHPVKINGYTPEKYTSYFSN 278
                  +Y     Q++  ++R+T Y     + N ++N Q    +     P  YT +   
Sbjct: 758 SQQNNQYNYGQGNSQNNQMQQRNTAYAQHRSQINNQNNSQQSVHQGTKNIPSNYTQHHQK 817

Query: 279 NVKNLSNFNPR 289
           N + + N N R
Sbjct: 818 N-QGMQNENTR 827


>UniRef50_Q3WG62 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. EAN1pec|Rep: Putative uncharacterized
           protein - Frankia sp. EAN1pec
          Length = 506

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 181 PNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQ--DSPR 238
           P+ A  G +     P GGEP G A     ++ G  D + +  R     PA  +   D+  
Sbjct: 380 PDGAPNGTTPKGDQPKGGEPTGTAGLNGHHAAGHGDDAVLPHRPVELVPAAPVDILDATP 439

Query: 239 RKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTS 274
            +R T  P F R  R HN  + P+K+ G  P   T+
Sbjct: 440 VRRRTRSPGFFRRRRAHN-AAGPLKLTGPRPMGLTA 474


>UniRef50_Q1E3L9 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 398

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 207 GIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKING 266
           G    RG  D +  ++ + +  P  +   +PR+K +++   F+  +  H   +HPV I G
Sbjct: 148 GTLRRRGGTDLAIYTTYKILSLP--KSTQAPRKKIASILNTFNLPSCPHMRLNHPVIIEG 205

Query: 267 YTPEKY---TSYFSNNVKN 282
           Y P+ +     Y+ ++++N
Sbjct: 206 YKPDAHPIDVKYYLSDMRN 224


>UniRef50_Q822Y4 Cluster: Probable O-sialoglycoprotein
           endopeptidase; n=7; Chlamydiaceae|Rep: Probable
           O-sialoglycoprotein endopeptidase - Chlamydophila caviae
          Length = 344

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 3/31 (9%)

Query: 74  AVGCRKPKIPENALECH---EYIEDENVEFP 101
           A+GC+KP I  N +E H    Y+E ENVEFP
Sbjct: 98  AIGCQKPIIGVNHVEAHLYAAYMEAENVEFP 128


>UniRef50_Q17HB5 Cluster: Homeobox protein otx; n=1; Aedes
           aegypti|Rep: Homeobox protein otx - Aedes aegypti
           (Yellowfever mosquito)
          Length = 413

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 198 GEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHN- 256
           G+  G    G+ N   A   + + S   I  P+P           +  P  +  N  HN 
Sbjct: 277 GQSLGSGGAGVSNGTSAGSLTPLGSSSSIMTPSPPTTPQTSHNPLSYVPNHETYNFWHNQ 336

Query: 257 YQSHPVKINGYTPEKYTSYFSNNVKNLSNFN 287
           YQ +P   N  +      YF N  +N SN+N
Sbjct: 337 YQQYPNNYNAPSYYSQMDYFQN--QNQSNYN 365


>UniRef50_Q8IAW3 Cluster: Putative uncharacterized protein
           PF08_0084; n=3; Plasmodium|Rep: Putative uncharacterized
           protein PF08_0084 - Plasmodium falciparum (isolate 3D7)
          Length = 235

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 237 PRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYT-SYFSNNVKNLSNFNPRLS 291
           P   + +V P+ +  ++ HN  S+P  IN      Y+ +Y SNN  N + FN  ++
Sbjct: 115 PSHHKYSVNPMHNNYHQAHNNYSYPNSINPSNQINYSNNYGSNNFNNSNEFNKNMN 170


>UniRef50_Q54X23 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1698

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 218  SDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGY-TPEKYTSYF 276
            +DI +      P PQ Q  P+++     P+F   +   N +++    N Y     Y + +
Sbjct: 1336 NDIGNENSQQQPQPQQQQQPQQQNK---PVFSYKSNVFNTKNNNNSYNNYNNNNNYNNNY 1392

Query: 277  SNNVKNLSNFN 287
            +NN  NL+N N
Sbjct: 1393 NNNYNNLNNKN 1403


>UniRef50_O86525 Cluster: Putative membrane protein SC1C2.25c; n=2;
           Streptomyces|Rep: Putative membrane protein SC1C2.25c -
           Streptomyces coelicolor
          Length = 1329

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 176 GQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSDIS 221
           GQQN P PA  G    QQ P  G PQG  + G+   +G A  ++ S
Sbjct: 814 GQQNRPAPAGAGAGAGQQAP--GAPQGLQAAGMNAPQGNAPANNAS 857


>UniRef50_Q8IIS1 Cluster: Putative uncharacterized protein; n=2;
           Eukaryota|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1368

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 151 NVCGVLYNKNYEHTYAVFNSSRPWKGQQNEPNPAVV 186
           N+CG + +K + +   +FN+    K ++N PNP +V
Sbjct: 203 NICGTICHKAFNNIKTIFNTYEEIKKRKNNPNPHMV 238


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,432,283
Number of Sequences: 1657284
Number of extensions: 14743435
Number of successful extensions: 33608
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 33603
Number of HSP's gapped (non-prelim): 14
length of query: 295
length of database: 575,637,011
effective HSP length: 100
effective length of query: 195
effective length of database: 409,908,611
effective search space: 79932179145
effective search space used: 79932179145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 72 (33.1 bits)