Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001374-TA|BGIBMGA001374-PA|undefined
(295 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81105-5|CAB03218.2| 331|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF100675-2|AAC69004.1| 451|Caenorhabditis elegans Hypothetical ... 29 3.9
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 29 3.9
U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily as... 29 5.2
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 29 5.2
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 29 5.2
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 28 9.1
>AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical
protein Y75B8A.3 protein.
Length = 827
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 205 SPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKI 264
S +FN GS S P P + +P+ + +T P++D++N + +
Sbjct: 241 SQNLFNQAIVQSGSVYSCYN----PTPAVPTNPQVQVTTPRPMYDQSNTGYGNAGYQNNY 296
Query: 265 NGYTPEKYTSYFSNNVKNLSNFNPRLSL 292
GY P+ TS S N N +P L
Sbjct: 297 -GYQPQPITSTSSYNSANAQYDDPSQQL 323
>Z81105-5|CAB03218.2| 331|Caenorhabditis elegans Hypothetical
protein R05D7.5 protein.
Length = 331
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 210 NSRGAADGSDISSRRFIDYPAPQMQDSPRR 239
N+ G DGS I RR + +P MQ++P R
Sbjct: 200 NAMGKLDGSFIKDRRIYNLSSPDMQNTPVR 229
>AF100675-2|AAC69004.1| 451|Caenorhabditis elegans Hypothetical
protein Y55H10A.1 protein.
Length = 451
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 221 SSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNNV 280
+SR PA ++ +S + V+ + N + VK N YT E Y + +V
Sbjct: 24 NSREIGGTPAAKLVESATAEEPVVFIV----NPDFTLGQFSVKANAYTSEPSADYLAKSV 79
Query: 281 KNLSNFN 287
KN SNF+
Sbjct: 80 KN-SNFH 85
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 175 KGQQNEPNP-AVVGMSGIQQTPVG--GEPQGQASPGIFNSRGA 214
+GQ +P A+VG++G + P G GEP Q PG+ GA
Sbjct: 197 RGQAGQPGTIAIVGLAG-RPGPQGPLGEPGAQGEPGVDGKDGA 238
>U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform d protein.
Length = 664
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 199 EPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVY 245
E +G+A+P I D D +SR F PA MQ++ R R T +
Sbjct: 56 ELEGRATPSIEPDLVGRDRYDKASRCFSYVPAKSMQEAFERPRRTSF 102
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 199 EPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVY 245
E +G+A+P I D D +SR F PA MQ++ R R T +
Sbjct: 56 ELEGRATPSIEPDLVGRDRYDKASRCFSYVPAKSMQEAFERPRRTSF 102
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 199 EPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVY 245
E +G+A+P I D D +SR F PA MQ++ R R T +
Sbjct: 56 ELEGRATPSIEPDLVGRDRYDKASRCFSYVPAKSMQEAFERPRRTSF 102
>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
protein B0198.3 protein.
Length = 1050
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 239 RKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNNVKN 282
R++ V P+ + R+ + HP++IN +P + Y S + K+
Sbjct: 811 RRQVMVTPVTADSGRQSQHDDHPLRINNASPNPSSGYDSFSSKD 854
>Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical
protein F42A8.1 protein.
Length = 370
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 31 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAV-GC 77
+ Y ACV R YQ + W+D + YRC DG+ + GC
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGC 148
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 229 PAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPE-KYTSYFSNNVKNLSNFN 287
P P ++ P ++ +V F+ T Y S N Y PE + T+ FSN +
Sbjct: 352 PLPHLESLPPKRTLSVPSYFNNTTYRPFYSSTDQTSNLYIPESQRTTIFSNEDAVPNELT 411
Query: 288 PRL 290
P L
Sbjct: 412 PML 414
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 229 PAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPE-KYTSYFSNNVKNLSNFN 287
P P ++ P ++ +V F+ T Y S N Y PE + T+ FSN +
Sbjct: 352 PLPHLESLPPKRTLSVPSYFNNTTYRPFYSSTDQTSNLYIPESQRTTIFSNEDAVPNELT 411
Query: 288 PRL 290
P L
Sbjct: 412 PML 414
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,830,880
Number of Sequences: 27539
Number of extensions: 346984
Number of successful extensions: 722
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 12
length of query: 295
length of database: 12,573,161
effective HSP length: 81
effective length of query: 214
effective length of database: 10,342,502
effective search space: 2213295428
effective search space used: 2213295428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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