Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001373-TA|BGIBMGA001373-PA|undefined
         (391 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    29   0.076
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    29   0.076
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    29   0.076
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    29   0.076
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           29   0.076
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    29   0.076
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    26   0.40 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.40 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    24   1.6  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   2.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   5.0  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 42  TAPGARASSGRTTDHC-PHQSPSGDGSSSNP--VYE--TRMYDTPRPVAEHSTTERQETS 96
           ++P +  SS  +T+    + + S  G SSNP  +Y    R++     V  +  T+RQ TS
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTS 226

Query: 97  QYRYKQEKLDYE 108
             RY+  +L+ E
Sbjct: 227 YTRYQTLELEKE 238


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 42  TAPGARASSGRTTDHC-PHQSPSGDGSSSNP--VYE--TRMYDTPRPVAEHSTTERQETS 96
           ++P +  SS  +T+    + + S  G SSNP  +Y    R++     V  +  T+RQ TS
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTS 226

Query: 97  QYRYKQEKLDYE 108
             RY+  +L+ E
Sbjct: 227 YTRYQTLELEKE 238


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 42  TAPGARASSGRTTDHC-PHQSPSGDGSSSNP--VYE--TRMYDTPRPVAEHSTTERQETS 96
           ++P +  SS  +T+    + + S  G SSNP  +Y    R++     V  +  T+RQ TS
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTS 226

Query: 97  QYRYKQEKLDYE 108
             RY+  +L+ E
Sbjct: 227 YTRYQTLELEKE 238


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 42  TAPGARASSGRTTDHC-PHQSPSGDGSSSNP--VYE--TRMYDTPRPVAEHSTTERQETS 96
           ++P +  SS  +T+    + + S  G SSNP  +Y    R++     V  +  T+RQ TS
Sbjct: 123 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTS 182

Query: 97  QYRYKQEKLDYE 108
             RY+  +L+ E
Sbjct: 183 YTRYQTLELEKE 194


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 42  TAPGARASSGRTTDHC-PHQSPSGDGSSSNP--VYE--TRMYDTPRPVAEHSTTERQETS 96
           ++P +  SS  +T+    + + S  G SSNP  +Y    R++     V  +  T+RQ TS
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTS 226

Query: 97  QYRYKQEKLDYE 108
             RY+  +L+ E
Sbjct: 227 YTRYQTLELEKE 238


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 42  TAPGARASSGRTTDHC-PHQSPSGDGSSSNP--VYE--TRMYDTPRPVAEHSTTERQETS 96
           ++P +  SS  +T+    + + S  G SSNP  +Y    R++     V  +  T+RQ TS
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTS 226

Query: 97  QYRYKQEKLDYE 108
             RY+  +L+ E
Sbjct: 227 YTRYQTLELEKE 238


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 54  TDHCPHQSPSGDGSSSNPVYETRMYDTPRPVAEHSTTERQETSQYR-YKQE 103
           T   P  SP     S +PV+E  +  T +  AE  T   Q+   ++ YK E
Sbjct: 225 TKSSPRSSPVQSDVSLSPVHEPLLITTEKLAAEGQTKLPQQPKLFKPYKSE 275


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 42  TAPGARASSGRTTDHC-PHQSPSGDGSSSNP--VYE--TRMYDTPRPVAEHSTTERQETS 96
           ++P +  SS  +T+    + + S    SSNP  +Y    R++     V  +  T+RQ TS
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTS 226

Query: 97  QYRYKQEKLDYE 108
             RY+  +L+ E
Sbjct: 227 YTRYQTLELEKE 238


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 104 KLDYEAP-RTPLSPKFNARELK 124
           KL +  P RTPL PK  A +LK
Sbjct: 54  KLQFRGPPRTPLQPKLVAGKLK 75


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 142 GLGQTFSEHQRSTESIPGGTKHSEYTIKSES-YQSFPKTEFSKTEFKQEVK-SPFT 195
           G G     H+R  ES  G   HSE    +ES +Q   ++    TE   E++  P+T
Sbjct: 84  GDGDKHDRHERHFESSFGNNLHSEKAKFNESKWQDSGESPGFTTERNWEIREKPYT 139


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 218 PDYERMASPYAKEGDSYGGPNYMEETTTEVKEIPNG---TQKITTTKIYSSSPVNLTSTS 274
           PD+ + A+PY+  G +Y   + ++  TT +    N    T         S+ P    S +
Sbjct: 288 PDHIQQATPYSAPGPTYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQISAQPTPSQSPN 347

Query: 275 TKYEPI 280
             Y+P+
Sbjct: 348 QIYQPV 353


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 328 SSDYQTTSNVTKIKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSSTVT-K 386
           + DY    N+  IK+  + +E  S+   + + T+T   +     +    KSE+S   + K
Sbjct: 187 NEDYSCEYNLVWIKEESIYEERISVVSGLHEATLTDLALGENYTVQIMAKSESSPFESLK 246

Query: 387 KFGNF 391
           K  NF
Sbjct: 247 KSLNF 251


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.123    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,089
Number of Sequences: 317
Number of extensions: 4252
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 391
length of database: 114,650
effective HSP length: 58
effective length of query: 333
effective length of database: 96,264
effective search space: 32055912
effective search space used: 32055912
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 44 (21.8 bits)