Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001373-TA|BGIBMGA001373-PA|undefined
         (391 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   1.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   1.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    23   5.9  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   5.9  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   5.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.8  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 270 LTSTSTKYEP--IKLDGIDEISKTFDSDSRYSTLDSRFNTLESKLSSDTSRSFMRPSEFQ 327
           LTS +  Y+P   K+  ID  S T         L    N L     + TS  ++   +F+
Sbjct: 226 LTSNTFDYDPKFTKMT-IDGESYTAQDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFR 284

Query: 328 SSDYQ 332
           +SDYQ
Sbjct: 285 TSDYQ 289


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 270 LTSTSTKYEP--IKLDGIDEISKTFDSDSRYSTLDSRFNTLESKLSSDTSRSFMRPSEFQ 327
           LTS +  Y+P   K+  ID  S T         L    N L     + TS  ++   +F+
Sbjct: 226 LTSNTFDYDPKFTKMT-IDGESYTAQDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFR 284

Query: 328 SSDYQ 332
           +SDYQ
Sbjct: 285 TSDYQ 289


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 323 PSEFQSSDYQTTSNVTKIKKPDLSKEIDSLDKRISKQTITSETIERKSVMTSSHKSETSS 382
           P  F+ S     S +T I + ++ KE   + + I  +T+  E+I+RKS +T    S+   
Sbjct: 418 PDIFRVSCATEHSQLTNISE-EVLKEAKIIQEEI--RTLLDESIQRKSDITELDVSKRCK 474

Query: 383 TVTKKFGN 390
            +    GN
Sbjct: 475 DLASFMGN 482


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 270 LTSTSTKYEP--IKLDGIDEISKTFDSDSRYSTLDSRFNTLESKLSSDTSRSFMRPSEFQ 327
           LTS +  Y+P   K+  ID  S T         L    N L     + TS  ++   +F+
Sbjct: 226 LTSNTFDYDPKFTKMT-IDGESYTAQDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFR 284

Query: 328 SSDYQ 332
           +SDYQ
Sbjct: 285 TSDYQ 289


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)

Query: 289 SKTFDSDSRYSTL 301
           SKTFD+D RYS L
Sbjct: 229 SKTFDNDLRYSEL 241


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 127 EHPEPIYSTLKKPSDG 142
           E P  +Y  LK+PSDG
Sbjct: 297 EQPVQVYIQLKRPSDG 312


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 127 EHPEPIYSTLKKPSDG 142
           E P  +Y  LK+PSDG
Sbjct: 297 EQPVQVYIQLKRPSDG 312


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 106 DYEAPRTPLSPKFNARELKFDEHPEPIYSTLKKPSD 141
           D   P T L  +    EL +D  P P YS    PSD
Sbjct: 245 DNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSD 280


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 208 TSSDLVKAATPDYERMASPYAKEGDSYGGPN-YMEETTTEVKEIPNGTQKI----TTTKI 262
           TSS+ +++ T D++  +S Y++E       N   +E     +++ N  +K+    T+ K 
Sbjct: 212 TSSNSLRSRTHDFQHTSSRYSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKR 271

Query: 263 YSSS 266
           YS S
Sbjct: 272 YSCS 275


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 228 AKEGDSYGGPNYMEETTTEVKEIPNGTQKITTTKIYSSSPVNLTSTSTKYEPIKLDGIDE 287
           A    ++  P+      T +  I   T   TTT   +++P    + S    P ++D +D+
Sbjct: 639 ASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDD 698


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 241 EETTTEVKEIPNGTQKITTTKIYSSSPVNLTSTS 274
           E+      +IP G    +TTKI     V +  T+
Sbjct: 64  EQGVVNWNKIPEGANTTSTTKIIDGHVVTINETT 97


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 241 EETTTEVKEIPNGTQKITTTKIYSSSPVNLTSTS 274
           E+      +IP G    +TTKI     V +  T+
Sbjct: 112 EQGVVNWNKIPEGANTTSTTKIIDGHVVTINETT 145


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 241 EETTTEVKEIPNGTQKITTTKIYSSSPVNLTSTS 274
           E+      +IP G    +TTKI     V +  T+
Sbjct: 112 EQGVVNWNKIPEGANTTSTTKIIDGHVVTINETT 145


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 35 HPGAAESTAPGARASS 50
          H G++ ST+P AR +S
Sbjct: 71 HSGSSASTSPAARTTS 86


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.123    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,422
Number of Sequences: 429
Number of extensions: 5807
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 14
length of query: 391
length of database: 140,377
effective HSP length: 59
effective length of query: 332
effective length of database: 115,066
effective search space: 38201912
effective search space used: 38201912
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 45 (22.2 bits)