Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001372-TA|BGIBMGA001372-PA|IPR002558|I/LWEQ,
IPR011000|Apolipophorin III-like, IPR009072|Histone-fold
(1856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 81 1e-15
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 36 0.041
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 34 0.22
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 33 0.29
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 33 0.38
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 33 0.50
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 32 0.87
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.87
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 31 1.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 31 1.5
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 31 2.0
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 30 2.7
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 29 4.7
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 29 4.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 6.2
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 29 6.2
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 6.2
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 8.1
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 8.1
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 81.4 bits (192), Expect = 1e-15
Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 1517 IAENELLGXXXXXXXXXKKLDSLRPRKPVKQEADETLNFDEMILEAAKSIIXXXXXXXXX 1576
+ +N+L +L ++ + + L + +L A+ +I
Sbjct: 859 LVDNQLAETAQAIQQAILRLQNIAAKPKDDSLSPSELQVHDSLLSASIAITEAIARLIKA 918
Query: 1577 XXXXQRELIDQG-AVARRPAMSSDDGSWSGGLVSAARLVAAATHSLVEAANALVQGAATE 1635
Q E++ QG + R A W+ GL+SAA+ VA AT +L+E A+ +V G ++
Sbjct: 919 ATASQAEIVAQGRGSSSRGAFYKKHNRWTEGLISAAKAVARATTTLIETADGVVNGTSSF 978
Query: 1636 ERLISSARQVASSTAHLLVACKVKADPGAESTRRLQAAGAEV-------IRSTDNLVRAA 1688
E LI + V+++TA L+ A +VKA+ ++ L+ A V +R +++ A
Sbjct: 979 EHLIVACNGVSAATAQLVAASRVKANFASKVQDHLEDAAKAVTEACKALVRQVESVALKA 1038
Query: 1689 RDAIHCDDERSLVLNRRMVGGIAQEIDARSEVLRIEKELEEARGRLTAIRQAKY 1742
++ H +D SL ++ +EI+ + ++L++E +L AR RL +R+ Y
Sbjct: 1039 KEVQH-EDFSSLGVHEYR----RKEIEQQVQILKLENDLVAARRRLFDMRKTSY 1087
Score = 30.3 bits (65), Expect = 2.7
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 554 VANRIRSAVVELGESISELIKAGGHCRLSAIAQNQRAVADSA--KLVNERVVSVLSGLQA 611
V + + SA + + E+I+ LIKA + +AQ + + + A K N ++S +A
Sbjct: 897 VHDSLLSASIAITEAIARLIKAATASQAEIVAQGRGSSSRGAFYKKHNRWTEGLISAAKA 956
Query: 612 GSRGTQACIHAAATISAIIGDLDTTILF---ASAGTLQ----SDKESDTFSDHRENILKT 664
+R T I A + + I+ SA T Q S +++ S ++++
Sbjct: 957 VARATTTLIETADGVVNGTSSFEHLIVACNGVSAATAQLVAASRVKANFASKVQDHLEDA 1016
Query: 665 AKALVEDTKTLV 676
AKA+ E K LV
Sbjct: 1017 AKAVTEACKALV 1028
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 54 GLVDQAQ-FGRAALAIQQACNLLADPASNQQQVLSAATVIAKHTSALCNACRVASGKTTE 112
GL+ A+ RA + + + + + S+ + ++ A ++ T+ L A RV + ++
Sbjct: 949 GLISAAKAVARATTTLIETADGVVNGTSSFEHLIVACNGVSAATAQLVAASRVKANFASK 1008
Query: 113 PQAKRHFVQAAKDVANSTAALVKEIKAL 140
Q H AAK V + ALV++++++
Sbjct: 1009 VQD--HLEDAAKAVTEACKALVRQVESV 1034
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 36.3 bits (80), Expect = 0.041
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 1282 QEDLNRLRAVVQYRNSLRKRPHSRAEEQLRMLDEIHNNRFREVEDVQ-EKKDESVMVTNV 1340
QE + VQ ++ L K+ R + ++ L E +N+ +++E +Q E E+V+ N+
Sbjct: 337 QEGASLAMQRVQNKHDLEKK---RLQSAIQPLQEENNSLKQQIEQLQRELASETVVKENL 393
Query: 1341 TSLLKTVKAVEDEHTRGTRALESTIEAISQEI 1372
S L A + RALESTI+ + +++
Sbjct: 394 KSSLDQQSANVQKLESTNRALESTIKTLEEDV 425
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 33.9 bits (74), Expect = 0.22
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 956 DEPKLKSPVFKIKKVKPINICSIKNSPEREMILTPQEPRGSTEIFITPEAKSAPTADPIK 1015
D+P L S ++K+ K K I + + PE + + G +I ++ K A I+
Sbjct: 94 DDPSLSSEIYKLCKSKKIPVNAADIPPECDFYFGSEIRNGPLQIMVSTNGKGPKLASLIR 153
Query: 1016 AKVE 1019
K+E
Sbjct: 154 KKIE 157
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 33.5 bits (73), Expect = 0.29
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 1251 EDILKNRENQFGTIDNWWSFYEAILNKESTSQEDLNRLRAVVQYRNSLRKRPHSRAEEQL 1310
+D + E+Q ++ + +S E+ LNK+ E + + + +YR+ L K
Sbjct: 1038 KDQCRTYESQLASLVSKYSETESELNKKEA--ELVIFQKEITEYRDQLHKA--------F 1087
Query: 1311 RMLDEIHNNRFREVEDVQEKKDESVMVTNVT--SLLKTVKAVEDEHTRGTRALESTIEAI 1368
+ ++ HN +V+ DE++ T+ T S+LK V+ ++ HT+ L I+ I
Sbjct: 1088 QNPEKTHN--INDVKSGPLNSDENIYSTSSTTLSILKDVQELKSLHTKEANQLSERIKEI 1145
Query: 1369 SQEIE 1373
S+ +E
Sbjct: 1146 SEMLE 1150
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 33.1 bits (72), Expect = 0.38
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 80 SNQQQVLSAATVIAKHTSALCNACRVASGKTTEPQAKRHFVQAAKDVA 127
S VL T AK +AL N R A GK+ PQA VQ+ ++V+
Sbjct: 142 SGNAVVLKGGTESAKSFAALSNVVRSALGKSKVPQAAVQLVQSREEVS 189
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 32.7 bits (71), Expect = 0.50
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 791 NDYNSCDSETDLFQSDQEEELV---KLLDYSSQDDDVSPTIFHDDCEEIVAYIESRMRRP 847
ND S E +SD EEE K +Y D V+ I DD +E +AY + P
Sbjct: 95 NDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDKHVTVEIVEDDDDEEIAYPKEGFVTP 154
Query: 848 TRTP 851
+P
Sbjct: 155 RISP 158
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 31.9 bits (69), Expect = 0.87
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 554 VANRIRSAVVELGESISELIKA-GGHCRLSAIAQNQRAVAD-SAKLVNERVVSVLSGLQA 611
V+ +R+ + EL + +S L K + A+ + R ++ K+++ R S+L
Sbjct: 404 VSEYVRT-IYELRQKVSILQKRIAEESKQLALNKEVRKISSREIKMLDAR--SMLKNSFD 460
Query: 612 GSRGTQ-ACIHAAATISAIIGDLDTTILFASAGTLQSDKESDTFSDHRENILKTAKALVE 670
GSR Q + I T+ I ++ T ++ S KESD S H ++T A +
Sbjct: 461 GSRDLQKSLIEHVRTLRRIEDEITLTKMWISIA-----KESDAMSGHNIKSVETRLAKLY 515
Query: 671 DTKTLVGGAAGTQEQLADAAQNAVTTIV 698
D ++L+ A E++ QN+++ IV
Sbjct: 516 DQRSLI-TAKVNPEEICKTFQNSISHIV 542
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.9 bits (69), Expect = 0.87
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 1255 KNRENQFGTIDNWWSFYEAILNKESTSQEDLNRLRAVVQYRNSLRKR--PHSRAEEQLRM 1312
KNR QF D ++ NK S ++ED + +VVQ N L+ + ++
Sbjct: 21 KNRRRQFQEEDQLRRNNKSS-NKLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTP 79
Query: 1313 LDEIHN-NRFREVEDVQEKKDESVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEAISQE 1371
L I + FRE + E + E + V+ V L V ++ + E IE ++ E
Sbjct: 80 LSSIQDLEGFREFMENLEHRYE-MTVSEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSE 138
Query: 1372 IEVLMSPSPPKSTATPEELIRCT 1394
I S K + + RC+
Sbjct: 139 ISNQNSLILQKKDELEKSIQRCS 161
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1041 KMEESRRELQRFSGHEL-VLEEIKMERDKYEKEKTRLQTFIDEVDTSIQKKRDLEYD 1096
++++++ E R ++ V+EEI++ R+K + E RL + E+ +KR+ E D
Sbjct: 807 QLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTETQRLSSLQTELSRLRDEKRNSEVD 863
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 31.1 bits (67), Expect = 1.5
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 1036 KRNLEK---MEESRRELQRFSGHELVLEEIKMERDKYEKEK--TRLQTFIDEVDTSIQKK 1090
KRN+E+ +E+S E QR + LE+ + R+ EK++ Q DE + ++K
Sbjct: 82 KRNVEEQNLIEQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEE---RRK 138
Query: 1091 RDLEYDQKYEEMVLKLIEFAK 1111
++L +K E+ ++LIE K
Sbjct: 139 KELMEKEKKEKERIRLIEEQK 159
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 1020 FWKLFKDDTEWWKALAKRNLEKMEESRRELQRFSGHELVLEEIKMERDKYEKEKTRLQTF 1079
F LF WW ++ K EE R + F H L +E+I +E D+ + E R F
Sbjct: 296 FEDLFHSGGTWWLDVS---CPKEEEIRVLAKAFGIHPLTVEDITLEEDREKVELFRTYYF 352
Query: 1080 I 1080
+
Sbjct: 353 V 353
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 644 TLQSDKESDTFSDHRENILKTAKALVEDTK----TLVGGAAGTQEQLADAAQNAVTTI 697
TLQS E + D +L+ A++ + +LVG ++G E LA A QN +T +
Sbjct: 41 TLQSQLEDKSAHDEVSGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITAL 98
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 29.5 bits (63), Expect = 4.7
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 847 PTRTPEDEGLNERYNAAARYSIVDMDWRVLKYGENILLGEVKKLLDLCLQLSDRNDSRRK 906
PT P G + + A + D DW ++ N L +K+L L + D N ++ K
Sbjct: 246 PTMAPSTGGAKPKSDLDAPRDVRDSDWELISL-RNELSKLDEKILSLQRETDDVNIAQNK 304
Query: 907 DESLQR 912
+ +QR
Sbjct: 305 SKLIQR 310
Score = 29.5 bits (63), Expect = 4.7
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 1051 RFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDTSIQKKRDLEYD-QKYEEMVLKLIEF 1109
R S EL+ ++ E K +++ LQ D+V+ + K + ++ D QK + L +++
Sbjct: 268 RDSDWELI--SLRNELSKLDEKILSLQRETDDVNIAQNKSKLIQRDLQKVLDYKLGILQS 325
Query: 1110 AKKDF----IYKGFDPLIERLKALANV---HVEGRKRKVVNIEDIL 1148
K D D ++ L+ NV H+EGRK +V +E+ L
Sbjct: 326 LKNDGPNGPSASAIDNDLKMLEQQLNVLGRHLEGRKSQVAKLEERL 371
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 29.5 bits (63), Expect = 4.7
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 1653 LVACKVKADPGAESTRRLQAAGAEVIRSTDNLVRAARDAI 1692
++ CK K D E RR+ A G V T NL A RDAI
Sbjct: 356 IIFCK-KKDTAEEIARRMTADGHTVACLTGNLEGAQRDAI 394
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.1 bits (62), Expect = 6.2
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 1255 KNRENQFGTIDNWWSFYEAILNKESTSQEDL-NRLRAVVQYRNSLRKRPHSRAEEQLRML 1313
K + G +N S + L++EST ++L ++L +L +R + A+E L +
Sbjct: 788 KALNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADE-LSSM 846
Query: 1314 DEIHNNRFREVEDVQEKKDESVMVTNVTSLLKTVKAVEDEHTRGTRALESTIEAISQEIE 1373
+ I+ N+ E++ ++K +N+ + + EHT +LE +EA ++
Sbjct: 847 ESINKNQANELKLAKQK------CSNLQEKINFGNKLAKEHTEKISSLEKDLEAATKTAS 900
Query: 1374 VL 1375
L
Sbjct: 901 TL 902
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 1036 KRNLEKMEESRRELQRFSGHELVLEEIKMERDKYEKEKTRLQTFID 1081
K ++ + ++ + + R ++ I E+++YEKE L TF+D
Sbjct: 133 KSSMGERQKQQAAMSRRGKKSIIHSAIIQEKERYEKESQELFTFLD 178
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit
Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 6.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1040 EKMEESRRELQRFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDTSIQKKRDLEYDQKY 1099
EK + R + ++ E + + E +K EKE+ RLQ + QK R+ E Q+
Sbjct: 101 EKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLREKEEAQRL 160
Query: 1100 -EEMVL 1104
+E +L
Sbjct: 161 RQEQIL 166
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 793 YNSCDSETDLFQSDQEEELVKLLDYSSQDDDVSPTIF-HDDCEEIVAY 839
+N +SE F + +ELV+LL DD P +F EI Y
Sbjct: 833 FNGMESERTYFNKESSQELVELLVADLGDDFKEPHLFLRSRLNEITVY 880
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 28.7 bits (61), Expect = 8.1
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 788 NGRNDYNSCDSETDLFQSDQEEELVKLLDYSSQDDDVSPTIFHDDCEE---IVAYIES-R 843
NG YN +ETD +D ++ +L + S + + S T HDD + + +++ +
Sbjct: 307 NGLLHYNMETAETDESYTDLDDTFARLKNLSQRHTNHS-TDHHDDTVDSHLLHSFVSAEN 365
Query: 844 MRRPTRTPEDEGLNERYNAAARY 866
PT +D L E+ A+++
Sbjct: 366 ANEPTNDVDDNSLQEQVADASQF 388
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,450,335
Number of Sequences: 5004
Number of extensions: 234182
Number of successful extensions: 878
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 34
length of query: 1856
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1773
effective length of database: 1,947,146
effective search space: 3452289858
effective search space used: 3452289858
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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