Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001372-TA|BGIBMGA001372-PA|IPR002558|I/LWEQ,
IPR011000|Apolipophorin III-like, IPR009072|Histone-fold
(1856 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 34 0.030
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 31 0.21
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 30 0.49
DQ974169-1|ABJ52809.1| 508|Anopheles gambiae serpin 11 protein. 28 2.6
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 27 3.5
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 27 4.6
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 27 4.6
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 34.3 bits (75), Expect = 0.030
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 1284 DLNRLRAVVQYRNSLRKRPHSRAEEQLRMLDEIHNNR---FREVEDVQEKKDESVMVTNV 1340
D R + R + R H E+++R+ +E +N+R FR +ED + ++ + NV
Sbjct: 710 DQQRRKVAALERYAAASREHDLLEQRIRLFEERNNDREANFRLLEDAYQSAKKT--LANV 767
Query: 1341 TSLLKTVKAVEDEHTRGTRAL 1361
L VKA + RAL
Sbjct: 768 EKKLAEVKAKSSDKNSTARAL 788
Score = 33.5 bits (73), Expect = 0.053
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 302 ALDTLNKQLRELDHAAIQAVAQELE--PRKANTLQGYAEQIENCCTEMLERLEPLRVAAR 359
AL TLN R DHA + QE + R+ + ++ QIEN E+ ER LR R
Sbjct: 598 ALRTLNLLNRSTDHALLAQKRQEHQRLVRECDKIRNQRGQIENSIKELQERCAELREQKR 657
Query: 360 AEAENL 365
E L
Sbjct: 658 DLQEQL 663
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 31.5 bits (68), Expect = 0.21
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 991 QEPRGSTEIFITPEAKSAPTADPIKAKVEFWKLFKDDTEWWKALAKRNLEKMEESRRELQ 1050
Q+ S E F EA+ + K K+E L K + K L + E+M ++RRE+Q
Sbjct: 853 QDDEDSLETFKQAEARQRQEIEKDKEKIE---LMKQEKAAHKTLVDQMEEEMAKARREVQ 909
Query: 1051 RFSGH-ELVLEEIKMERDKYEKEKTRLQTFI 1080
+ + + I + E K++ QT +
Sbjct: 910 ALAKELAAIHQSIANIESRIESMKSKRQTIL 940
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 30.3 bits (65), Expect = 0.49
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 1269 SFYEAILNKESTSQEDLNRLRAVVQYRNSLRKR--PHSRAEEQLRMLDEIHNNRFREVED 1326
S + I +K S + + L+ + + L K+ H+ + EQLR+ + HN F E
Sbjct: 401 SLNKQIKDKISHQNKLQDDLKKDIAKQGELEKKIQEHTESFEQLRVQIDEHNKNFYE--- 457
Query: 1327 VQEKKDESVMVTN-----VTSLLKTVKAVEDEHTRGTRALES 1363
+++KKD + N T++ +T+ ++E R +AL S
Sbjct: 458 LKKKKDHYQSLRNDIWKKETAVTQTLSGYKEELARADQALRS 499
>DQ974169-1|ABJ52809.1| 508|Anopheles gambiae serpin 11 protein.
Length = 508
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1047 RELQRFSGHELVLEEIKMERDKYEKEKTRLQTFIDEVDTSI 1087
REL+RF+ +L+ ++E+D+ K K +L F E S+
Sbjct: 365 RELRRFTAQDLLTILTEIEQDEPSKVKLQLPEFKAETTVSL 405
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1277 KESTSQEDLNRLRAVVQYRNSLRKRPHSRAEEQLRMLDEIHNNRF 1321
K S +EDL RL + + N RK S+ L + DE+ NN F
Sbjct: 296 KSSEQREDLRRLYILAR-SNLKRKIKASKRRCFLALCDEVENNPF 339
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 27.1 bits (57), Expect = 4.6
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 1220 TLKRSHRNMEIFDLTRTYPQEYY-------ANNWW-SIYEDILKNRENQFGTIDNWWSFY 1271
TL+ S + + DL +T QEY + NW +I++DI ++ T+++ +FY
Sbjct: 3192 TLEHSQIDKQFHDLKQTV-QEYRQLADNRNSGNWLDNIFKDIEEDFNVFLSTVNHSRTFY 3250
Query: 1272 EAILNKESTSQEDLNRLRAVVQYR 1295
+ + + ++L R ++Q++
Sbjct: 3251 YQLCERIAALSDELEESRHILQHK 3274
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 27.1 bits (57), Expect = 4.6
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 1220 TLKRSHRNMEIFDLTRTYPQEYY-------ANNWW-SIYEDILKNRENQFGTIDNWWSFY 1271
TL+ S + + DL +T QEY + NW +I++DI ++ T++ +FY
Sbjct: 3195 TLEHSQIDKQFHDLKQTV-QEYRQLADNRNSGNWLDNIFKDIKEDFNVFLSTVNPSRTFY 3253
Query: 1272 EAILNKESTSQEDLNRLRAVVQYR 1295
+ + + E+L R ++Q++
Sbjct: 3254 YQLRERIAALSEELEESRHILQHK 3277
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.314 0.129 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,287
Number of Sequences: 2123
Number of extensions: 51558
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 12
length of query: 1856
length of database: 516,269
effective HSP length: 74
effective length of query: 1782
effective length of database: 359,167
effective search space: 640035594
effective search space used: 640035594
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -