GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001371-TA|BGIBMGA001371-PA|IPR002558|I/LWEQ
         (697 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   3.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   4.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 264 TSSATQLITSAQNATQYNTNRYSQETLLEECKVLNEH 300
           T++ T   T+A  AT   T    QETL     + N H
Sbjct: 112 TTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHH 148


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 255 RLQESARQATSSATQLITSAQNATQYNTNRYSQETLLEECKVLN-EHLP 302
           R ++   +  S  +++I+S  N T +N N Y          ++N E +P
Sbjct: 299 RFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKLYYNIINIEQIP 347


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 230 KAAEELRFITADYAQGQDIVGSQVARLQESARQATSSATQLITSAQN 276
           KAAEE  F  ++   G  I G  VA+         SSA   IT  +N
Sbjct: 229 KAAEEAGFGVSEDLSGDRINGFTVAQTISRNGVRLSSARAFITPFEN 275


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 395 IKSLQEELDELEEAVRAFDLKPLPGQT 421
           IK  +E++ E+ +     +L+P PG T
Sbjct: 167 IKKAKEDVIEVIQKAHNMELEPTPGNT 193


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.123    0.331 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,322
Number of Sequences: 429
Number of extensions: 3993
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 697
length of database: 140,377
effective HSP length: 62
effective length of query: 635
effective length of database: 113,779
effective search space: 72249665
effective search space used: 72249665
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)