GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001370-TA|BGIBMGA001370-PA|IPR000299|Band 4.1
         (1027 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    26   1.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   2.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    25   2.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   2.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   6.1  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 341 SVQTTEAEQILQVIAGYIDIIVRKQRAKEHLGIEGDEGSAMLEDS 385
           ++Q  EAE+I++    ++ +  RK + K     EG EG A +E+S
Sbjct: 209 NMQKREAEKIVRPDLIHLLMEARKGKLKHDNSNEGGEGFATVEES 253


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 793 FSNHDYANVNYDPPKHDYSSVNLHRRTKNDILR 825
           ++N DY N N+ P  H   +    R  +N +LR
Sbjct: 85  YTNLDYGNSNFPPINHQNYNEPYQRTHENMLLR 117


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 793 FSNHDYANVNYDPPKHDYSSVNLHRRTKNDILR 825
           ++N DY N N+ P  H   +    R  +N +LR
Sbjct: 85  YTNLDYGNSNFPPINHQNYNEPYQRTHENMLLR 117


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 793 FSNHDYANVNYDPPKHDYSSVNLHRRTKNDILR 825
           ++N DY N N+ P  H   +    R  +N +LR
Sbjct: 85  YTNLDYGNSNFPPINHQNYNEPYQRTHENMLLR 117


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 724 PANFHNNRTDDADLESII 741
           PA F+ +R D  D+ESI+
Sbjct: 17  PAEFYESRYDHLDVESIL 34


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 687 EDVDVTRTWGLDAIQEESDSDYYRSLA 713
           ++ DV +T  LD IQ+E   +YY +++
Sbjct: 518 DEADV-KTEDLDEIQKEKGDEYYETIS 543


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 687 EDVDVTRTWGLDAIQEESDSDYYRSLA 713
           ++ DV +T  LD IQ+E   +YY +++
Sbjct: 518 DEADV-KTEDLDEIQKEKGDEYYETIS 543


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 687 EDVDVTRTWGLDAIQEESDSDYYRSLA 713
           ++ DV +T  LD IQ+E   +YY +++
Sbjct: 518 DEADV-KTEDLDEIQKEKGDEYYETIS 543


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 687 EDVDVTRTWGLDAIQEESDSDYYRSLA 713
           ++ DV +T  LD IQ+E   +YY +++
Sbjct: 518 DEADV-KTEDLDEIQKEKGDEYYETIS 543


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,455
Number of Sequences: 317
Number of extensions: 9451
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 1027
length of database: 114,650
effective HSP length: 64
effective length of query: 963
effective length of database: 94,362
effective search space: 90870606
effective search space used: 90870606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)