Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001370-TA|BGIBMGA001370-PA|IPR000299|Band 4.1
(1027 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.36
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 32 0.47
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 31 0.82
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 30 1.9
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 2.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 2.5
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 29 2.5
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 29 3.3
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 29 4.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 5.8
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 5.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 5.8
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 28 5.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 5.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.3 bits (70), Expect = 0.36
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Query: 437 TVSGQVVTGHAPPAASQVQQTKVTSILTEPQRALLTTITSGREIIKQTEEGLSRTTLPEL 496
T S +T + +A T I LL++ITS I+ T + LP
Sbjct: 717 THSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSA 776
Query: 497 GGDASSVKWKQSTLDTNKQAVSSQIAAMN-AATAQVVTLTAGPTEEVDHTAVGAAITTIT 555
+ S STL T+ SS ++ ++T + T PT V T ++ T++
Sbjct: 777 TASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPT--VSSTTSSSSTTSLA 834
Query: 556 SN 557
+N
Sbjct: 835 AN 836
Score = 31.5 bits (68), Expect = 0.62
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 449 PAASQVQQTKVTSILTEPQRALLTTITSGREIIKQTEEGLSRTTLPELGGDASSVKWKQS 508
PA+++VQ T V+SI T ++ + +S + + +T ASS QS
Sbjct: 439 PASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASS---PQS 495
Query: 509 TLDTNKQAVSS-QIAAMNAATAQVVTLTAGPTEEVDHTAVGAAITTITSNLP 559
TL T+ + VS ++ ++A T ++ P+ + + + + +++ +S++P
Sbjct: 496 TLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSS-SSSIP 546
Score = 30.7 bits (66), Expect = 1.1
Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 9/191 (4%)
Query: 426 AVGHVTGAQLTTVSGQVVTGHAPP--AASQVQQTKVTSILTEPQRALLTTITSGREIIKQ 483
A V+G+ ++V+ T + AA+ V + +S+ T ++ + TS
Sbjct: 979 ATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATA---SVTDSSTSSVATASA 1035
Query: 484 TEEGLSRTTLPEL-GGDASSVKWKQSTLDTNKQAVSSQIAAMNAATAQVVTLTAGPTEEV 542
T+ S + + G SSV +T + ++ I +++ ++T PT V
Sbjct: 1036 TDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSV 1095
Query: 543 DHTAVGAAITTITSNLPEVTRGVRMIAALMDDSDNGDRLLDATRKLCTAFTDLLKAAEPE 602
TAV ++ +++ A L D+ +G + ++ ++ + A
Sbjct: 1096 --TAV-SSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATTADSSV 1152
Query: 603 TKEPRQNLLNA 613
T + N NA
Sbjct: 1153 TTDTPSNDFNA 1163
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 452 SQVQQTKVTSILTEPQRALLTTITSGREIIKQ-TEEGLSRTTLPELGGD-ASSVKWKQST 509
SQ + V S +L T+I + T G +++ G D A+S W T
Sbjct: 873 SQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSW---T 929
Query: 510 LDTNKQAVSSQIAAMNAATAQVVTLTAGPTEEVDHTAVGAAITTITSNL 558
+T+ A++S +AA T+ + + EVD + +A + TS++
Sbjct: 930 AETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSI 978
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 687 EDVDVTRTWGLDAIQEESDSDYYRSLAYCDAVLRPGRPANFHNNRTDDADLESIIGTCVD 746
++ +V W + Q+E+ YYRSL D + R G H D D +G
Sbjct: 32 DEEEVYGVWTEEPFQKEAGRSYYRSLKKNDVIYRVGDDITVH-----DGDSSFYLGVICK 86
Query: 747 YLDKKID 753
+K ID
Sbjct: 87 LYEKAID 93
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 31.1 bits (67), Expect = 0.82
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 13/197 (6%)
Query: 341 SVQTTEAEQILQVIAGYIDIIVRKQRAKEHLGIEGDEGSAMLEDSVSPSKANIIQHDTFK 400
S TE E+ + +D ++R H + + S++N + D F
Sbjct: 452 SAVKTEKEKKMSAPRRSLDKLIRIGSLHRHHHHHHKTDLIESDSGIEASESNRRKSDIFS 511
Query: 401 SGKVNTESVAKPAVHRPGAEGAKPFAVGHVTGAQLTTVSGQVVTGHAPPAASQVQQTKVT 460
N+ SV++P+ + + + + V+G+ TG PP +QT +T
Sbjct: 512 FSGRNSFSVSRPS------SSHSTLSYANDSASSAVNVAGE--TGSLPPLR---EQTSIT 560
Query: 461 SILTEPQRALLTTITSGREIIKQTE-EGLSRTTLPELGGDASSVKWKQSTLDTNKQAVSS 519
S + P L +++ +I+++ + +S++ P SV K T + N V+
Sbjct: 561 SGV-PPSNRLKKHVSTPEKIVEERSIDEVSQSNTPSSKQLPQSVDGKTVTANANSTTVAK 619
Query: 520 QIAAMNAATAQVVTLTA 536
Q + A T TA
Sbjct: 620 QPTSNVALTRPKPVRTA 636
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 818 RTKNDILRQRFFLSNNIDKNDINDRFNRYKDKKIECHSIRNDVTKSGPDVSVAGALNLKI 877
RTK + + + +N + ++ + + + K ECH + + K +
Sbjct: 1383 RTKYEQVVNKSLEKHNQIRQQLSQKTSELEAKVAECHQLNEQLNKPSATPTATTQSEPST 1442
Query: 878 LNPDRYNRVLTTKETFYEESEASFTKTSLSKLKN--DRFENFVKKSEKYYTSSDGSDRKT 935
++ + +N +TKE E S T+ LS++ + + + ++K + S+G+ + T
Sbjct: 1443 VSLEEFN---STKE------ELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSKDT 1493
Query: 936 EILNNSE 942
EI N E
Sbjct: 1494 EIPNEEE 1500
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 865 PDVSVAGALNLKILNPDRYNRVLTTKETFYEESEASFTKTSLSKLKNDRFENFVKKSEKY 924
P + + A +L +LN D + L+ E T S+ + ND F+ +K +
Sbjct: 427 PQIVHSIAFSLLLLNTDLHIAELSASERMSRNQFVENTYRSIKQALNDSFDGNEEKKNAF 486
Query: 925 YTSSDGSDRKTEILNN 940
+ SS S E N+
Sbjct: 487 FLSSYKSFASNESCNS 502
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 283 GKNKLVPRLLGVTKDSVLRLDEKTKEILQTWPLTTVRRWCASPN----TFTLDFGDYSDQ 338
GK K +L + S++ KT + Q WP+T + + + F D G S
Sbjct: 358 GKKKKRTGILAINNKSIVLTFTKTMDAAQVWPVTDLVNYSSERKHVFIEFNSDSGITSLH 417
Query: 339 YYSVQTTEAEQILQVI 354
++ T A+ I++ +
Sbjct: 418 LHASSNTNADNIIRAL 433
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 271 GVAFFLVKEKMKGKNKLVPRLLGVTKDSVLRLDEKTKEILQ 311
G++F L +E+ + K++ VP + + KD + +D+ TK++L+
Sbjct: 68 GISFKLQEEERERKDQYVPEVSELEKDKI-NVDQDTKDMLK 107
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 29.1 bits (62), Expect = 3.3
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 834 IDKNDINDRFNRYKDKKIECHSIRNDV---TKSGPDVSVAGALNLKILNPDRYNRVLTTK 890
+D+ D+N K K + + ++V +K GP+ S AGA + + LTT
Sbjct: 8 VDQIDLNGALPEKKKKPKKSVAFDDEVDAVSKDGPEASSAGATDEDDSERKSSAKDLTTP 67
Query: 891 ETFYEESEASFTKTSLSKLKNDRFENFVKKSEKYYTSSDGSDRKTEILNNSEGQL 945
T E E K S +K KKS+K SS ++ +TE + G+L
Sbjct: 68 VT---EGEVDELKDMFSSMKKK------KKSKK---SSASAEEQTEDITTESGEL 110
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 389 SKANIIQHDTFKSGKVNTESVAKPAVHRPGAEGAKPFAVGHVTGAQLTTVSGQ 441
S N+ Q D+ K V++ + KP ++R +E + G + ++ + SG+
Sbjct: 224 SSNNLFQSDSLKPSMVSSHTSTKPVLYRGNSEKSCHSCGGSLRAGRIISASGK 276
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.3 bits (60), Expect = 5.8
Identities = 49/189 (25%), Positives = 70/189 (37%), Gaps = 14/189 (7%)
Query: 375 GDEGSAMLEDSVSPSKANIIQHDTFKSGKVNTESVAKPAVHRPGAEGAKPFAVGHVTGAQ 434
G G+A E V+ A +Q T +G TE+ + A T Q
Sbjct: 1233 GATGTAGTETQVTT--ATEVQPTTGATGTAGTETQVTTGTETQATTATETQATT-ATEVQ 1289
Query: 435 LTT-VSGQVVTGHAPPAASQVQQTK--VTSILTEPQRALLTTI--TSGREIIKQTEEGLS 489
TT +G T A++VQ T + TE Q T + T+G TE ++
Sbjct: 1290 TTTGATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPTTGATGTAGTETQVT 1349
Query: 490 RTTLPELGGDASSVKWKQSTLDTNKQAVSSQIAAMNAATAQVVTLT-AGPTEEVDHTAVG 548
T + A++ Q+T T Q + T QV T T PT V T+
Sbjct: 1350 TGTETQ----ATTATETQATTATEVQTTTGATGTAGTET-QVTTATEVQPTTAVTETSSS 1404
Query: 549 AAITTITSN 557
TTI S+
Sbjct: 1405 GYYTTIVSS 1413
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 831 SNNIDKNDINDRFNRYKDKKIECHSIRNDVTKS 863
SN + +N++ D F + +D K++ H I+ + KS
Sbjct: 541 SNTMFENELPDSFFKVEDVKVDIHHIKLKIRKS 573
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 605 EPRQNLLNAASRVGEASTSVLYTIGEETEEDKQTQVTEPD 644
+PR+ S + E S + T+GE K T +TE D
Sbjct: 323 DPRKGFKWKLSSLKERSAEIFNTLGERNSSSKLTNLTEDD 362
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 433 AQLTTVSGQVVTGHAPPAASQVQQTKVTSILTEP----QRALLTTITSGREIIKQTEEGL 488
A L T G + H ++ V + P +RA + SG + K+ + L
Sbjct: 409 AALITAGGAISGAHIGTTGMAHRKADVKTFEFRPLHAQRRANVIVTVSGWMLSKEDDVRL 468
Query: 489 SRTTLPELGGDASSVKWKQSTLDTNKQAVS 518
S TL + GD SV W+ L + Q ++
Sbjct: 469 SFATLDPIVGDIYSVFWEPEMLASAGQTMN 498
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 86 REEQKEEPDPCEKPNYGTLTLKRKHQ-EKERDAKMEQLRKKLRTDDEVNWVEGSLTLREQ 144
R+++++E E+ +K + EKER EQ R+K D ++ E + LR++
Sbjct: 104 RQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQE 163
Query: 145 GVEAGETLLLRRKLFYSDRNVDSR 168
+ E L+ F++ + V+ R
Sbjct: 164 QILNKERQQLKLNNFFT-KGVEKR 186
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,570,633
Number of Sequences: 5004
Number of extensions: 195713
Number of successful extensions: 456
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 23
length of query: 1027
length of database: 2,362,478
effective HSP length: 80
effective length of query: 947
effective length of database: 1,962,158
effective search space: 1858163626
effective search space used: 1858163626
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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