Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001369-TA|BGIBMGA001369-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    30   0.33 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.3  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    28   1.7  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   4.0  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   5.3  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.3  

>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 153 VDFYPFSTKASVFDRNPPETDVLTAVLWKTVAAIDKKMYLTNDFDKIEVQITSYNRCFES 212
           V+F+ F++K+ V       TDV+T V    + +     +   +F+ I V+     +C   
Sbjct: 631 VNFFGFNSKSRVVAAKTSVTDVITMV----IPSSPMPRFRAINFESITVESNLSTQCGSG 686

Query: 213 YGVDLDASLICIDLTEYEE 231
              D D  ++ + LT Y E
Sbjct: 687 VLTDDDGLVVALWLTHYGE 705


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 24  KFATDITMEERKRDSNTGSVYQLAKT--MGIINLKENYSLNN 63
           KF  D+T + R RDS+   +YQL  T     +   +N S+NN
Sbjct: 476 KFIHDVTYDHRLRDSHR-EIYQLQGTGYRPFLRANDNASINN 516


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 117 TKNYSHTYPVLYWKLHQKYNVSKPTLRHDVAVAKLNVDFYPFSTKASVFDRNPPETDVLT 176
           +  YS  YP   +    K+     TL  + A+A  N+D   +         +P    V  
Sbjct: 56  SNKYSEGYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQ 115

Query: 177 AVL--WKTVAAIDKKM--YLTNDFDKIEVQITSYNRCFES--YGVDLDASLICIDLTEYE 230
           A++     +  +D     +L++ +     +I++ +  FES  Y VD +  LI  D+ E++
Sbjct: 116 AIMPPHGRLMGLDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHD 175


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 136 NVSKPTLRHDVAVAKLNVDFYPFSTKASVFDRNPPETDVLTAVLWKTVAAIDKKMYLTND 195
           NV K +  + V  A+++V  Y F+TK S+F  +     +   V+  T   +D  +   N 
Sbjct: 178 NVGKSSFMNKVTRAQVDVQPYAFTTK-SLFVGHFDYKYLRWQVI-DTPGILDHPLEQMNT 235

Query: 196 FDKIEVQITSYNRCFESYGVDLDASLICIDLTEYEECFVHEFGPLYYEDKIVGVL----A 251
            +   +   ++ R    Y +DL  S +C      +    H   PL+     + VL    A
Sbjct: 236 IEMQSITAMAHLRSAVLYFMDL--SEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293

Query: 252 VKPRDCDTK 260
           ++P D D K
Sbjct: 294 MRPEDLDQK 302


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 119 NYSHTYPVLYWKLHQKYNVSKPTLRHDVAVAKLNVDFYPFSTKASVFDRNPPETDVLTA 177
           +Y   + V   +LH  Y   +     DV   K++  ++P++++ SV    P     L A
Sbjct: 279 DYELMFEVAKLRLHGMYKYPRNYTVSDVLFRKVSRQYWPYTSENSVLANTPQSIISLAA 337


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 175 LTAVLWKTVAAIDKKMYLTNDFDKIEVQITSYNRCFESYGVDLDASL 221
           LT+VLW  VA +     L  + D++   + +  + FE Y      SL
Sbjct: 3   LTSVLWNFVAKLAVDHGLNTNPDQVFQTVENVGKSFEKYETSFLKSL 49


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,238
Number of Sequences: 5004
Number of extensions: 56937
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 6
length of query: 284
length of database: 2,362,478
effective HSP length: 72
effective length of query: 212
effective length of database: 2,002,190
effective search space: 424464280
effective search space used: 424464280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)