Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001369-TA|BGIBMGA001369-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (284 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    35   0.057
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    29   3.7  
AL032623-14|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    29   4.9  
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    29   4.9  
AL021472-3|CAA16300.1|  259|Caenorhabditis elegans Hypothetical ...    28   6.5  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 85  CFASVILVKWIVTSAHCVKRDTKHRLLLFHDYTKNYSHTYPVLYWKLHQKYNVSKPTLRH 144
           C A+VI   W+VT+AHC  +      +   +   N   ++ V    +H  YN    T  +
Sbjct: 66  CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERSFSVKEAYIHSGYN--NQTADN 123

Query: 145 DVAVAKLNVDFYPFSTK 161
           D+A+ +++ D      K
Sbjct: 124 DIALLRISSDLSKLGIK 140


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 67  FPYVGAVVANTSGIWSFSCFASVILVKWIVTSAHCVKRDTK--HRLLLFHDYTKNYSH-T 123
           FP+  A+        +  C AS++    ++T+AHC + D +     ++  D+  N +   
Sbjct: 38  FPWTAAL--RNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGN 95

Query: 124 YPVLYWKLHQKYNVSKPTLRHDVAVAKL 151
             + Y +    Y + K    HD+A+ ++
Sbjct: 96  EQIFYLQRIHFYPLYKDIFSHDIAILEI 123


>AL032623-14|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 131 LHQKYNVSKPTLRHDVAVAKL-NVDFYPFSTKASVFDRNPPETDVLTAVLWKTVAAIDKK 189
           LHQ     KPT + +    +L +VD +    K  + + NPP+  + +  +W       K 
Sbjct: 11  LHQHLYTEKPTQKMEEPYHELYDVDVFLAKAK-EMSELNPPDVVLFSECIWGAATVCIKT 69

Query: 190 MYLTN 194
            +L N
Sbjct: 70  FFLEN 74



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 158 FSTKA-SVFDRNPPETDVLTAVLWKTVAAIDKKMYLTNDFDKIEVQITSYNRCF 210
           F TKA ++    PP+  + + ++W   A   KK++    FD  ++ ITS++  F
Sbjct: 195 FLTKAENMLVLTPPDVVLFSELIWGAAARCIKKLF----FDNFKITITSHSDIF 244


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 240 LYYEDKIVGVLAVKPRDCDTKYAI 263
           L+YED ++ ++ VKP D +T + I
Sbjct: 307 LFYEDAVLEMMEVKPNDVETTFII 330


>AL021472-3|CAA16300.1|  259|Caenorhabditis elegans Hypothetical
           protein Y17D7B.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/60 (26%), Positives = 21/60 (35%)

Query: 115 DYTKNYSHTYPVLYWKLHQKYNVSKPTLRHDVAVAKLNVDFYPFSTKASVFDRNPPETDV 174
           +Y K ++H Y    W  H    + K            N  F  F  +  VF  N  E DV
Sbjct: 169 NYRKRFAHDYRKWKWDRHDSTYIPKGKFDPKTLKLDYNEFFEDFDEEIEVFPTNYAEIDV 228


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,965,188
Number of Sequences: 27539
Number of extensions: 290710
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 6
length of query: 284
length of database: 12,573,161
effective HSP length: 81
effective length of query: 203
effective length of database: 10,342,502
effective search space: 2099527906
effective search space used: 2099527906
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)