Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001369-TA|BGIBMGA001369-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (284 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53940.1 68414.m06143 GDSL-motif lipase/hydrolase family prot...    28   8.2  
At1g09320.1 68414.m01043 agenet domain-containing protein contai...    28   8.2  

>At1g53940.1 68414.m06143 GDSL-motif lipase/hydrolase family protein
           similar to lipase GI:1145627 from (Arabidopsis
           thaliana); contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 436

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 156 YPFSTKASVFDRNPPETDVLTAVLWKTVAAIDKKMY 191
           YPFST +S+F  +P E  V   V+  T A I K++Y
Sbjct: 181 YPFSTNSSIFQSSPQEIYV-DFVVGNTTAVI-KEVY 214


>At1g09320.1 68414.m01043 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 517

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 166 DRNPPETDVLTAVLWKTVAAIDKKMYLTNDFDKIEVQITSYNRCFESYGVDLDASLICID 225
           D +  E D+L  V  +T  AI K+M+ +    ++      +  C+ +  V ++       
Sbjct: 196 DDSEDEEDILARVDLETTRAIAKQMFSSGTVVEVSSDEEGFQGCWFAAKV-VEPVGEDKF 254

Query: 226 LTEYEECFVHE-FGPLYYEDKIVGVLAVKPRDCDTKYAIFTNV-SFYRD--WI 274
           L EY +    +   PL  E   + +    PRD D  +A+   + +FY D  W+
Sbjct: 255 LVEYRDLREKDGIEPLKEETDFLHIRPPPPRDEDIDFAVGDKINAFYNDGWWV 307


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,540,765
Number of Sequences: 28952
Number of extensions: 264005
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 2
length of query: 284
length of database: 12,070,560
effective HSP length: 80
effective length of query: 204
effective length of database: 9,754,400
effective search space: 1989897600
effective search space used: 1989897600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)