GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001369-TA|BGIBMGA001369-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (284 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    31   1.1  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     29   3.2  
05_05_0182 - 23045837-23046026,23046112-23046306,23046852-230470...    29   5.6  

>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 218 DASLICIDLTEYEECFVHEFGP--LYYEDKIVGVLAVKPRDCDTKYAIFTNVSFYRDWIL 275
           D  ++ +D  E  +  V+E G   LY +DK+ G+L   P D   K+           +I 
Sbjct: 229 DEEVVILDCIEGNDLQVNEAGRMYLYNDDKVKGLLKENPNDMIKKWRGRMTSKPLEAFIF 288

Query: 276 KSTGTTCY 283
           K    TCY
Sbjct: 289 KKWEDTCY 296


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 160 TKASVFDRNPPETDVLTAVLWKTVAAIDKKMYLTNDFDKIEVQITSYNRCFESY 213
           TK  + + NP E   + + + K + AI+K +    D +KI++     + C  SY
Sbjct: 387 TKEMLDENNPDEPKQILSNIQKEITAIEKAISHVKDDNKIQLGTADNSECEISY 440


>05_05_0182 -
           23045837-23046026,23046112-23046306,23046852-23047094,
           23047456-23047496,23047703-23047813,23047965-23048216,
           23048508-23048657,23048760-23048778,23049129-23049688
          Length = 586

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 112 LFHDYTKNYSHTYPVLYWKLHQKYNVSKPTLRHDVAVAKLNVD 154
           ++HD+ ++++ TYP  Y  LH  Y +   T R D+      +D
Sbjct: 494 VYHDWCESFN-TYPRTYDLLHMSYLLGSLTNRCDIMEVAAEID 535


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,645,890
Number of Sequences: 37544
Number of extensions: 294698
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 3
length of query: 284
length of database: 14,793,348
effective HSP length: 81
effective length of query: 203
effective length of database: 11,752,284
effective search space: 2385713652
effective search space used: 2385713652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)