GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001369-TA|BGIBMGA001369-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (284 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.1  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/28 (25%), Positives = 16/28 (57%)

Query: 113 FHDYTKNYSHTYPVLYWKLHQKYNVSKP 140
           +++Y  NY++ Y  LY+ ++    +  P
Sbjct: 337 YNNYNNNYNNNYKKLYYNINYIEQIPVP 364


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 114 HDYTKNYSHTYPVLYWKLHQKYNVS 138
           ++Y  NY++ Y   Y KL++ Y ++
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 114 HDYTKNYSHTYPVLYWKLHQKYNVS 138
           ++Y  NY++ Y   Y KL++ Y ++
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIIN 123


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 179 LWKTVAAIDKKMYLTNDFDKIEVQITSYNRCFESY 213
           LWK  A I+  + + + F    V I  ++   ES+
Sbjct: 335 LWKDKAMIEANVAVLHSFQMKNVTIVDHHTASESF 369


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 112 LFHDYTKNYSHTYPVL 127
           L H YT++ S TY VL
Sbjct: 253 LVHLYTRDQSETYDVL 268


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,713
Number of Sequences: 429
Number of extensions: 3739
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 284
length of database: 140,377
effective HSP length: 57
effective length of query: 227
effective length of database: 115,924
effective search space: 26314748
effective search space used: 26314748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)