GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001368-TA|BGIBMGA001368-PA|IPR001220|Legume lectin, beta
domain
         (482 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.80 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.5  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 212 SKADTTSKADTISEAATTIKSETVSKTNTTSTLEVATKSNKTSEITTVS 260
           S + T S        ATTI + T + T TT+T    T  N T   +  +
Sbjct: 640 SLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATT 688



 Score = 24.2 bits (50), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 206 SKAVTTSKADTTSKADTISEAATTIKSETVSKTNTTSTLEVATKSNKTSEITT 258
           SKA +T  +  T    T + A TT+ + + + T   +   V   SN T+ +TT
Sbjct: 206 SKAGSTDAS--TPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTT 256



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 209 VTTSKADTTSKADTISEAATTIKSETVSKTNTTSTLEVATKSNKTSEI 256
           VTT+ A TT  A + +       S  V+ +N T+ +   T +  T  +
Sbjct: 219 VTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRL 266


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 204 TASKAVTTSKADTTSKADTISEAATTIKSETVSKTNTTSTLEVATKSNKTSEITTV 259
           T    +++ K    S+   I++   T + ++V  TN T+T+   T S  +   TTV
Sbjct: 800 TTQPVISSRKEQKKSEEKNINDHCVTTE-QSVVVTNVTTTINTPTTSVISMSGTTV 854


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 300 IEALLDIVSNLTFDYDTNLTLV 321
           +EALLDI    T+D    L +V
Sbjct: 491 VEALLDIFDTYTYDTICQLNIV 512


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 292 KSTLPKFDIEALLDIVSNLTFDYDTNLTLV 321
           K TLP + IE + D ++ + FD +  L  +
Sbjct: 31  KPTLPGYKIECVGDDIAWMKFDKEGRLRAI 60


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,315
Number of Sequences: 429
Number of extensions: 4405
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 6
length of query: 482
length of database: 140,377
effective HSP length: 60
effective length of query: 422
effective length of database: 114,637
effective search space: 48376814
effective search space used: 48376814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)