Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001366-TA|BGIBMGA001366-PA|undefined
         (242 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13535| Best HMM Match : DUF827 (HMM E-Value=7.8)                    31   0.65 
SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06)                  31   1.1  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                29   4.6  
SB_27060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_18858| Best HMM Match : WXG100 (HMM E-Value=0.65)                   28   8.0  

>SB_13535| Best HMM Match : DUF827 (HMM E-Value=7.8)
          Length = 154

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 13 SRKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
          S KH E L++      VL L   + ++  IE  +IWE+++++LN +   V+K
Sbjct: 12 SEKHDECLIQ-----EVLTLEPFKEKKRDIERGRIWEEVSENLNSLRVPVFK 58


>SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06)
          Length = 257

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 3   EGHPMYRRLVSRKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQ-SLNKVDEK 61
           +G  +   L+ +K  E+L  +++ +    +S   SR      R  W K     L  +D  
Sbjct: 37  KGAKVTSELLEKKRDELLSSFVDGHLANEVSTQGSRVRRYVQRPDWTKHPLFPLYPIDYT 96

Query: 62  VYKTGCKWSRY-----WADWKFKIRRKYICLKKCQSNGVACSVRLSP 103
           V K   +  ++     W D  F  +RKYI  K CQ     C     P
Sbjct: 97  VCKNNDREEKFGLCKIWKDLGFCRKRKYIMKKFCQKECGLCKALAPP 143


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 42  IEARKIWEKIAQSLNKVDEKVYKTGCKW 69
           ++A +IW     S++ ++ ++Y+T C W
Sbjct: 835 LDAEQIWTGTRASIDDLERRLYETACVW 862


>SB_27060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/30 (33%), Positives = 21/30 (70%)

Query: 178 LSQDPIELDHDRKSLEELRRDLLKFELKKQ 207
           L +  +E+++ R  +E+LRR+L +  L+K+
Sbjct: 17  LQEKDLEIENQRYEIEDLRRELTRIRLEKK 46


>SB_18858| Best HMM Match : WXG100 (HMM E-Value=0.65)
          Length = 222

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 7   MYRRLVSRKHLEILVKYMEKYPVLALSCARSREEVIEARK-IWEKIAQSLNKVDEK 61
           M RRL  +   EI +   EKY +      R   EV +  K +WE+  Q+  +V EK
Sbjct: 105 MVRRLEEKNKREIQIAEAEKYKLKFEQEERLHREVQQREKELWEERLQAEIRVAEK 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,128,328
Number of Sequences: 59808
Number of extensions: 257814
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 6
length of query: 242
length of database: 16,821,457
effective HSP length: 80
effective length of query: 162
effective length of database: 12,036,817
effective search space: 1949964354
effective search space used: 1949964354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)