GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001366-TA|BGIBMGA001366-PA|undefined
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   1.9  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   4.3  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    26   5.7  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.5  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    25   10.0 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   10.0 

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 8   YRRLVSRKHLEILVKYMEKYPVLALSCARS--REEVIEARKIWEKIAQSLNKVDEK-VYK 64
           Y  L+  +  E L  Y EK+ +       S   +E+  A+K++EK  + L KV+ K VY 
Sbjct: 209 YGELLVMRECEALFTYPEKFRLYHKQEKYSLLMQEIENAKKLYEKDRERLAKVNPKLVYL 268

Query: 65  TGCKW 69
               W
Sbjct: 269 VDHAW 273


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 87  LKKCQSNGVACSVRLSPYEQKVIKILTDEEGNLLS 121
           LK+ +    +CSV LS Y++++ KI T  E   L+
Sbjct: 111 LKRLEEYNTSCSVLLSLYQRQLKKISTTIESYYLA 145


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 37  SREEVIEARKIWEKIAQSLNKVDEKVY 63
           S+E+V   R++ EK+A  L K D+ V+
Sbjct: 141 SQEDVKSEREVAEKLANELEKSDKTVF 167


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 169  IEYADIKPNLSQDPIELDHDRKSLEELRRDL 199
            I Y  +  +LS + ++LDHD  + E+L  D+
Sbjct: 1004 IPYTSLSNHLSTEIVKLDHDIYNYEKLWADV 1034


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 17  LEILVKYMEKYPVLALSCARSREEVIE 43
           L+ L KY+EK     + CA SR  +++
Sbjct: 203 LQTLSKYLEKELAYPILCASSRSSILD 229


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 167 IHIEYADIKPNLSQDPIELDHDRKSLE 193
           ++ E AD+   L Q+ + LD  RKSL+
Sbjct: 480 LNSEIADLSLRLQQEELSLDDIRKSLQ 506


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 989,431
Number of Sequences: 5004
Number of extensions: 37249
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 6
length of query: 242
length of database: 2,362,478
effective HSP length: 71
effective length of query: 171
effective length of database: 2,007,194
effective search space: 343230174
effective search space used: 343230174
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)