GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001366-TA|BGIBMGA001366-PA|undefined
         (242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0104 + 745114-745584,745657-745718,745804-745910,746091-74...    29   3.4  
02_01_0452 + 3251693-3251839,3251956-3252318                           29   3.4  
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560     28   5.9  
10_08_0756 + 20344406-20344590,20345811-20345880,20346229-203462...    28   7.9  

>08_01_0104 +
          745114-745584,745657-745718,745804-745910,
          746091-746186,746326-746375
          Length = 261

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1  MGEGHPMYRRLVSRKHLEILVKYMEKYPVLALSCARSREEVIE--ARKIWEKIAQSLNKV 58
          MGE        V R  + +  + MEKY V++ S  + +E+  E  +R +WE   +S   V
Sbjct: 35 MGEKTEYRDGPVERAFMGLFARKMEKYAVVSSSGGKGKEKKKEKSSRSVWEWDYESFVDV 94

Query: 59 DEKV 62
            +V
Sbjct: 95 SRRV 98


>02_01_0452 + 3251693-3251839,3251956-3252318
          Length = 169

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 33  SCARSREE---VIEARKIWEKIAQSLNKVD--EKVYKTGCKWSRYWADWKFKIRR 82
           +C   R++   ++E+R+ W+   Q  N +D  EK+    C W +   D+K ++R+
Sbjct: 100 TCTEFRQQSQALVESREPWQPSTQGGNSIDDLEKLKSNFCMWKK---DYKARLRK 151


>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
          Length = 546

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 10  RLVSRKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYKTGCK- 68
           R ++R+H  +++  + + PV+  S A +  EV+  R I E   + ++++   V+  G + 
Sbjct: 65  RDLARRHGPLMLLRLGELPVVVASSAEAAREVMRTRDI-EFATRPMSRMTRLVFPAGTEG 123

Query: 69  --WSRYWADWKFKIRRKYICLKKCQSNGVACSVRLSPYEQKVIKILTDEEGNLLSPS 123
             ++ Y  +W+ ++R+  +C  +  S     S R +  E++V ++L        SPS
Sbjct: 124 IIFAPYGDEWR-ELRK--VCTVELLSARRVQSFR-AVREEEVGRLLRAVAATSSSPS 176


>10_08_0756 +
           20344406-20344590,20345811-20345880,20346229-20346291,
           20348390-20348521,20348604-20348737,20351245-20351323,
           20353050-20353111,20353211-20353310,20353448-20353489,
           20353605-20353646,20353959-20354150
          Length = 366

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 73  WADWKFKIRRKYICLKKCQSNGVACSVRLSPY 104
           W +W+  + RK++ L+    N ++ +V L P+
Sbjct: 81  WREWREDLSRKFLSLQAMICNELSSNVELKPF 112


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,977,871
Number of Sequences: 37544
Number of extensions: 212920
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 4
length of query: 242
length of database: 14,793,348
effective HSP length: 80
effective length of query: 162
effective length of database: 11,789,828
effective search space: 1909952136
effective search space used: 1909952136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)